FvH4_6g53540

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
39223331 .. 39224429
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53540.t1

Sequence Viewer

Length: 1080 bp
ATGAAAAGCTCACCCATGGCCGCCTCCGTTCTCCTCTCCCTGATTCTCCTCACCCTCTCCTCCTCCTCCGCCGTCGTCGTCGCTTCCCCTTCCACCCTCCTCTCCGCCGCCAACGCCCTCTCCAACTCCGGCTACCTCTCCATGGCCCTCACCCTCCAGCTCGCCTCCAGCGCCGGCCTCGACCTCGACTACCCCGCCGCCACCATCTTCGCTCCGCCGGACACCGCCTTCTTCCAGTCGGGCCCACCCTCCCTCCCTCTCCTCCAGTACCACATCTCCCCCCGCCGCCTCTCCGCCAAAACCCTGCCCTACCTCCTCCGCGGCACCAAGATCCAGACTCTGCTCCCGAATCACACGCTCACCGTGACGTCATCTTTTGCTTCCGAGGGCTATTCCTCCATCGATGATGTTCGGGTCGACCCGAACTCGGTTCTTGACGACGGGGCGGTGATCATCTACGCCGTCGACCGGTTCTTTAACCTCACTTTCTCGGAGGCCAGCGAGGTTTCGGCTCCGGCGCCGGCCCCGATCTCTGCGATTTCCGTTCCGCCGCCGCATCGGCCGTTCGGGTCGGTCGCCGACGCGCTGAGGTCCAGAGGCTGCTCGATCATGGCGGCGTTCCTCGACGCGCAGCTCATCGGCTTCAACCGCAAGACGGCGCTTACGGTGTTCGCGGCGGCCGACGACGCCGTCCAGGACTACGCGAGGAACACCTCCGACTACTCGGCGATTTTCCGGTCGCACGTCGTCCCGGCGCTGCTGACGTGGCAAGATCTGGTGGCGCTCGACGACGGGACGACGCTGCCTACGTTCGAGGAAGGGTTCACGATCAGTGTCGTCAAGATGGGCGACGTCCCCGTACTCAATGACGTTCCGGTGGCCGATCAGGACCTCTACCTGAGCCGCTTTGTGGTTGTTCATGGCATCAATCGCTTGCTGACCTCACAGACGGAGACGGTGACGCAAGCGGAGGAGGCGGTTGGGGATCAAGAAGATGGTGGCGCTGATGTGAATGATGGGTATGTTGCTGCCAATGTTGCTGAACAGATCAACCCTCTGGGTTTTGATGACTATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

38.04

Weight (kDa)

4.4

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 215 - 314 3.5e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 689
AatII GACGTC 2 cut(s) 371, 855
AccB1I GGYRCC 2 cut(s) 323, 517
AccI GTMKAC 2 cut(s) 417, 465
AccII CGCG 5 cut(s) 321, 584, 629, 674, 704
AclWI GGATC 2 cut(s) 325, 993
AcoI YGGCCR 4 cut(s) 18, 560, 678, 879
AcyI GRCGYC 4 cut(s) 368, 518, 687, 852
AfaI GTAC 2 cut(s) 269, 861
AfiI CCNNNNNNNGG 5 cut(s) 142, 427, 468, 655, 910
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 1 cut(s) 646
AjiI CACGTC 2 cut(s) 745, 765
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 3 cut(s) 9, 160, 634
AluI AGCT 3 cut(s) 9, 160, 634
Alw26I GTCTC 1 cut(s) 947
AlwI GGATC 2 cut(s) 325, 993
AlwNI CAGNNNCTG 2 cut(s) 340, 600
AoxI GGCC 9 cut(s) 18, 144, 175, 241, 495, 522, 560, 678, 879
ApaI GGGCCC 1 cut(s) 245
ApeKI GCWGC 5 cut(s) 600, 631, 757, 802, 1028
AsiGI ACCGGT 1 cut(s) 468
AspLEI GCGC 8 cut(s) 173, 520, 586, 631, 661, 757, 784, 1004
AspS9I GGNCC 6 cut(s) 145, 241, 242, 523, 591, 889
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 6 cut(s) 3, 43, 142, 352, 460, 970
AvaII GGWCC 2 cut(s) 591, 889
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 2 cut(s) 323, 517
BanII GRGCYC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 587
BbvI GCAGC 5 cut(s) 587, 643, 744, 789, 1015
BccI CCATC 5 cut(s) 212, 407, 838, 989, 1010
BceAI ACGGC 5 cut(s) 56, 446, 547, 672, 674
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 1 cut(s) 947
BfoI RGCGCY 6 cut(s) 174, 521, 662, 758, 785, 1005
BglI GCCNNNNNGGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 695, 752
Bme18I GGWCC 2 cut(s) 591, 889
BmgBI CACGTC 2 cut(s) 745, 765
BmgT120I GGNCC 6 cut(s) 145, 241, 242, 523, 591, 889
BmiI GGNNCC 5 cut(s) 243, 325, 513, 519, 525
BmrFI CCNGG 2 cut(s) 695, 752
BmsI GCATC 2 cut(s) 565, 933
BpmI CTGGAG 3 cut(s) 140, 151, 248
Bpu10I CCTNAGC 2 cut(s) 587, 899
BpuMI CCSGG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 1071
BsaHI GRCGYC 4 cut(s) 368, 518, 687, 852
BsaJI CCNNGG 4 cut(s) 15, 141, 319, 384
BsaWI WCCGGW 3 cut(s) 468, 735, 874
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 237, 260, 267, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 427, 468, 655, 910
Bse118I RCCGGY 3 cut(s) 173, 468, 520
Bse1I ACTGG 2 cut(s) 235, 265
Bse8I GATNNNNATC 1 cut(s) 1071
BseBI CCWGG 1 cut(s) 695
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 4 cut(s) 15, 141, 319, 384
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 5 cut(s) 142, 427, 468, 655, 910
BseMII CTCAG 2 cut(s) 578, 890
BseNI ACTGG 2 cut(s) 235, 265
BseRI GAGGAG 9 cut(s) 23, 38, 49, 52, 55, 89, 251, 305, 986
BseSI GKGCMC 1 cut(s) 245
BseX3I CGGCCG 2 cut(s) 560, 678
BseXI GCAGC 5 cut(s) 587, 643, 744, 789, 1015
Bsh1236I CGCG 5 cut(s) 321, 584, 629, 674, 704
Bsh1285I CGRYCG 5 cut(s) 469, 563, 576, 681, 740
BshFI GGCC 9 cut(s) 20, 146, 177, 243, 497, 524, 562, 680, 881
BshNI GGYRCC 2 cut(s) 323, 517
BshTI ACCGGT 1 cut(s) 468
BshVI ATCGAT 1 cut(s) 402
BsiEI CGRYCG 5 cut(s) 469, 563, 576, 681, 740
BsiSI CCGG 9 cut(s) 129, 174, 218, 469, 515, 521, 736, 752, 875
BslFI GGGAC 3 cut(s) 734, 808, 839
BslI CCNNNNNNNGG 5 cut(s) 142, 427, 468, 655, 910
BsmAI GTCTC 1 cut(s) 947
BsmBI CGTCTC 1 cut(s) 947
BsmFI GGGAC 3 cut(s) 734, 808, 839
BsnI GGCC 9 cut(s) 20, 146, 177, 243, 497, 524, 562, 680, 881
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
Bsp19I CCATGG 2 cut(s) 15, 141
BspANI GGCC 9 cut(s) 20, 146, 177, 243, 497, 524, 562, 680, 881
BspCNI CTCAG 2 cut(s) 579, 891
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 5 cut(s) 321, 584, 629, 674, 704
BspLI GGNNCC 5 cut(s) 243, 325, 513, 519, 525
BspPI GGATC 2 cut(s) 325, 993
BspT107I GGYRCC 2 cut(s) 323, 517
BsrFI RCCGGY 3 cut(s) 173, 468, 520
BsrI ACTGG 2 cut(s) 235, 265
BssAI RCCGGY 3 cut(s) 173, 468, 520
BssECI CCNNGG 4 cut(s) 15, 141, 319, 384
BssMI GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
BssNI GRCGYC 4 cut(s) 368, 518, 687, 852
BssT1I CCWWGG 2 cut(s) 15, 141
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 3 cut(s) 364, 667, 958
BstACI GRCGYC 4 cut(s) 368, 518, 687, 852
BstC8I GCNNGC 6 cut(s) 162, 175, 499, 522, 935, 966
BstDEI CTNAG 2 cut(s) 587, 899
BstDSI CCRYGG 3 cut(s) 15, 141, 319
BstFNI CGCG 5 cut(s) 321, 584, 629, 674, 704
BstH2I RGCGCY 6 cut(s) 174, 521, 662, 758, 785, 1005
BstHHI GCGC 8 cut(s) 173, 520, 586, 631, 661, 757, 784, 1004
BstKTI GATC 9 cut(s) 333, 453, 531, 609, 775, 831, 886, 988, 1050
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
BstMCI CGRYCG 5 cut(s) 469, 563, 576, 681, 740
BstMWI GCNNNNNNNGC 9 cut(s) 113, 170, 559, 648, 686, 766, 930, 974, 1037
BstNI CCWGG 1 cut(s) 695
BstSCI CCNGG 2 cut(s) 693, 750
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 5 cut(s) 321, 584, 629, 674, 704
BstV1I GCAGC 5 cut(s) 587, 643, 744, 789, 1015
BstX2I RGATCY 2 cut(s) 330, 772
BstYI RGATCY 2 cut(s) 330, 772
BstZI CGGCCG 2 cut(s) 560, 678
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 9 cut(s) 20, 146, 177, 243, 497, 524, 562, 680, 881
BsuTUI ATCGAT 1 cut(s) 402
BtgI CCRYGG 3 cut(s) 15, 141, 319
BtrI CACGTC 2 cut(s) 745, 765
BtsIMutI CAGTG 2 cut(s) 838, 1075
Cac8I GCNNGC 6 cut(s) 162, 175, 499, 522, 935, 966
CaiI CAGNNNCTG 2 cut(s) 340, 600
CfoI GCGC 8 cut(s) 173, 520, 586, 631, 661, 757, 784, 1004
Cfr10I RCCGGY 3 cut(s) 173, 468, 520
Cfr13I GGNCC 6 cut(s) 145, 241, 242, 523, 591, 889
Cfr42I CCGCGG 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 5 cut(s) 590, 635, 695, 808, 970
Csp6I GTAC 2 cut(s) 268, 860
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 4 cut(s) 16, 142, 610, 920
CviQI GTAC 2 cut(s) 268, 860
DdeI CTNAG 2 cut(s) 587, 899
DinI GGCGCC 1 cut(s) 519
DpnI GATC 9 cut(s) 332, 452, 530, 608, 774, 830, 885, 987, 1049
DpnII GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
DrdI GACNNNNNNGTC 1 cut(s) 689
DseDI GACNNNNNNGTC 1 cut(s) 689
EaeI YGGCCR 4 cut(s) 18, 560, 678, 879
EagI CGGCCG 2 cut(s) 560, 678
EciI GGCGGA 5 cut(s) 58, 94, 204, 283, 537
EclXI CGGCCG 2 cut(s) 560, 678
Eco130I CCWWGG 2 cut(s) 15, 141
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 591, 889
Eco52I CGGCCG 2 cut(s) 560, 678
EcoO109I RGGNCCY 1 cut(s) 889
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 2 cut(s) 15, 141
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 15, 141
Esp3I CGTCTC 1 cut(s) 947
FaeI CATG 4 cut(s) 19, 145, 613, 923
FaiI YATR 5 cut(s) 17, 143, 611, 921, 1023
FaqI GGGAC 3 cut(s) 734, 808, 839
FatI CATG 4 cut(s) 15, 141, 609, 919
FauI CCCGC 2 cut(s) 202, 290
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 2 cut(s) 417, 465
FriOI GRGCYC 1 cut(s) 245
GlaI GCGC 8 cut(s) 172, 519, 585, 630, 660, 756, 783, 1003
GsuI CTGGAG 3 cut(s) 140, 151, 248
HaeII RGCGCY 6 cut(s) 174, 521, 662, 758, 785, 1005
HaeIII GGCC 9 cut(s) 20, 146, 177, 243, 497, 524, 562, 680, 881
HapII CCGG 9 cut(s) 129, 174, 218, 469, 515, 521, 736, 752, 875
HgaI GACGC 5 cut(s) 590, 635, 695, 808, 970
HhaI GCGC 8 cut(s) 173, 520, 586, 631, 661, 757, 784, 1004
Hin1I GRCGYC 4 cut(s) 368, 518, 687, 852
Hin1II CATG 4 cut(s) 19, 145, 613, 923
Hin6I GCGC 8 cut(s) 171, 518, 584, 629, 659, 755, 782, 1002
HinP1I GCGC 8 cut(s) 171, 518, 584, 629, 659, 755, 782, 1002
HincII GTYRAC 2 cut(s) 418, 466
HindII GTYRAC 2 cut(s) 418, 466
HinfI GANTC 3 cut(s) 43, 337, 349
HpaII CCGG 9 cut(s) 129, 174, 218, 469, 515, 521, 736, 752, 875
HphI GGTGA 6 cut(s) 3, 43, 142, 352, 460, 970
Hpy166II GTNNAC 3 cut(s) 418, 466, 825
Hpy188I TCNGA 3 cut(s) 385, 493, 718
Hpy188III TCNNGA 8 cut(s) 334, 346, 434, 594, 826, 841, 887, 989
Hpy8I GTNNAC 3 cut(s) 418, 466, 825
HpyAV CCTTC 3 cut(s) 99, 238, 812
HpyCH4III ACNGT 3 cut(s) 364, 667, 958
HpyCH4IV ACGT 6 cut(s) 368, 744, 764, 809, 852, 870
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 170, 559, 648, 686, 766, 930, 974, 1037
HpyF3I CTNAG 2 cut(s) 587, 899
HpySE526I ACGT 6 cut(s) 368, 744, 764, 809, 852, 870
Hsp92I GRCGYC 4 cut(s) 368, 518, 687, 852
Hsp92II CATG 4 cut(s) 19, 145, 613, 923
HspAI GCGC 8 cut(s) 171, 518, 584, 629, 659, 755, 782, 1002
KasI GGCGCC 1 cut(s) 517
KroI GCCGGC 2 cut(s) 173, 520
KroNI GCCGGC 2 cut(s) 175, 522
Ksp22I TGATCA 1 cut(s) 450
KspI CCGCGG 1 cut(s) 322
Kzo9I GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
LmnI GCTCC 3 cut(s) 217, 348, 517
Lsp1109I GCAGC 5 cut(s) 587, 643, 744, 789, 1015
LweI GCATC 2 cut(s) 565, 933
MaeII ACGT 6 cut(s) 368, 744, 764, 809, 852, 870
MaeIII GTNAC 2 cut(s) 364, 958
MalI GATC 9 cut(s) 332, 452, 530, 608, 774, 830, 885, 987, 1049
MboI GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
MboII GAAGA 3 cut(s) 199, 223, 1004
MflI RGATCY 2 cut(s) 330, 772
MhlI GDGCHC 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 147, 741
MroNI GCCGGC 2 cut(s) 173, 520
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 9 cut(s) 129, 174, 218, 469, 515, 521, 736, 752, 875
MspR9I CCNGG 2 cut(s) 695, 752
MvaI CCWGG 1 cut(s) 695
MvnI CGCG 5 cut(s) 321, 584, 629, 674, 704
MwoI GCNNNNNNNGC 9 cut(s) 113, 170, 559, 648, 686, 766, 930, 974, 1037
NaeI GCCGGC 2 cut(s) 175, 522
NarI GGCGCC 1 cut(s) 518
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 2 cut(s) 15, 141
NdeII GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
NgoMIV GCCGGC 2 cut(s) 173, 520
NlaIII CATG 4 cut(s) 19, 145, 613, 923
NlaIV GGNNCC 5 cut(s) 243, 325, 513, 519, 525
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 2 cut(s) 364, 958
PcsI WCGNNNNNNNCGW 2 cut(s) 678, 806
PdiI GCCGGC 2 cut(s) 175, 522
PfeI GAWTC 2 cut(s) 43, 349
PflFI GACNNNGTC 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 693
PinAI ACCGGT 1 cut(s) 468
PleI GAGTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 889
Psp5II RGGWCCY 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 5 cut(s) 243, 325, 513, 519, 525
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 6 cut(s) 145, 241, 242, 523, 591, 889
PspPPI RGGWCCY 1 cut(s) 889
PstNI CAGNNNCTG 2 cut(s) 340, 600
PsuI RGATCY 2 cut(s) 330, 772
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 2 cut(s) 269, 861
RsaNI GTAC 2 cut(s) 268, 860
SacII CCGCGG 1 cut(s) 322
SalI GTCGAC 2 cut(s) 416, 464
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 9 cut(s) 330, 450, 528, 606, 772, 828, 883, 985, 1047
Sau96I GGNCC 6 cut(s) 145, 241, 242, 523, 591, 889
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 695, 752
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 2 cut(s) 565, 933
SfoI GGCGCC 1 cut(s) 519
Sfr303I CCGCGG 1 cut(s) 322
SgrBI CCGCGG 1 cut(s) 322
SinI GGWCC 2 cut(s) 591, 889
SspDI GGCGCC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 693, 750
StyI CCWWGG 2 cut(s) 15, 141
TaaI ACNGT 3 cut(s) 364, 667, 958
TaiI ACGT 6 cut(s) 371, 747, 767, 812, 855, 873
TaqI TCGA 9 cut(s) 180, 186, 402, 417, 465, 605, 624, 786, 813
TaqII GACCGA 1 cut(s) 562
TfiI GAWTC 2 cut(s) 43, 349
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 364, 958
TseI GCWGC 5 cut(s) 600, 631, 757, 802, 1028
Tsp45I GTSAC 2 cut(s) 364, 958
TspDTI ATGAA 2 cut(s) 17, 908
TspGWI ACGGA 3 cut(s) 16, 532, 965
TspRI CASTG 1 cut(s) 838
Tth111I GACNNNGTC 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 591, 889
XmiI GTMKAC 2 cut(s) 417, 465
ZraI GACGTC 2 cut(s) 369, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.