Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000614

Physical Location & Seq

Genomic Coordinates Forward (+)

50459698 .. 50462775

Gene Structure 3078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0330000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCAAATCCGGAAACTATGTTTGGCATACGCGGAGATGGAAGGTGTTTGTTTCGATCTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGACAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCGCATGTCCTGCAGATACCGATTACAGTTTATATGCGGGACAAGAATTCTAGGAGTCTCAGAATCATAGCTGAATATGGTAAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCATTGCGTGGTCCAAGTCCAACTACTGGTGCAGCGTCCAAGCAGTTGAAACAAAGAACAGAGATGCAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

162

Amino Acids

18.7

Weight (kDa)

7.81

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	11 - 137	1.3e-28	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40940
fragaria_vesca	FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica	MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica	Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis	pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis	RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata	RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora	Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa	Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha	Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana	Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	3 cut(s)	33, 229, 310
AcsI	RAATTY	2 cut(s)	158, 319
AfaI	GTAC	2 cut(s)	222, 387
AfiI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
AgsI	TTSAA	2 cut(s)	197, 463
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	74, 136, 344
AluI	AGCT	3 cut(s)	74, 136, 344
Alw26I	GTCTC	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	158, 319
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	32, 103, 120
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	230, 447
BlsI	GCNGC	2 cut(s)	231, 448
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmsI	GCATC	3 cut(s)	216, 403, 468
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 244, 440
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	249, 346
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	326
Bsp13I	TCCGGA	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	3 cut(s)	33, 229, 310
BspCNI	CTCAG	2 cut(s)	250, 345
BspEI	TCCGGA	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	80, 137, 258, 332
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 283
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	425
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	221, 386
CviAII	CATG	3 cut(s)	68, 278, 395
CviJI	RGCY	8 cut(s)	74, 94, 111, 136, 176, 256, 344, 399
CviKI_1	RGCY	8 cut(s)	74, 94, 111, 136, 176, 256, 344, 399
CviQI	GTAC	2 cut(s)	221, 386
DdeI	CTNAG	4 cut(s)	80, 137, 258, 332
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	425
EcoRI	GAATTC	2 cut(s)	158, 319
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	3 cut(s)	71, 281, 398
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	67, 277, 394
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	230, 447
Fsp4HI	GCNGC	2 cut(s)	230, 447
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	230, 447
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	71, 281, 398
HinfI	GANTC	2 cut(s)	328, 336
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	117, 335
Hpy188III	TCNNGA	2 cut(s)	11, 194
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	36, 139
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	5 cut(s)	128, 286, 416, 446, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 283
HpyF3I	CTNAG	4 cut(s)	80, 137, 258, 332
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	71, 281, 398
Kpn2I	TCCGGA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	24, 72, 270, 296, 426
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	3 cut(s)	216, 403, 468
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	2 cut(s)	158, 319
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	162, 165, 242, 283
Mph1103I	ATGCAT	1 cut(s)	418
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	399, 411
MspI	CCGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	262, 283
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	3 cut(s)	71, 281, 398
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	231, 448
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	288
RsaI	GTAC	2 cut(s)	222, 387
RsaNI	GTAC	2 cut(s)	221, 386
RseI	CAYNNNNRTG	2 cut(s)	399, 411
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	230, 447
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	337
SetI	ASST	6 cut(s)	47, 76, 138, 150, 219, 346
SfaNI	GCATC	3 cut(s)	216, 403, 468
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	399, 411
Sse9I	AATT	2 cut(s)	158, 319
SsiI	CCGC	3 cut(s)	33, 229, 310
SspMI	CTAG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	158, 319
TatI	WGTACW	2 cut(s)	220, 385
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	56, 151, 171
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	158, 319
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.