Rh4AG381700

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000614
Physical Location & Seq
Reverse (-)
68751082 .. 68752506
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG381700.1

Sequence Viewer

Length: 753 bp
ATGGCGGTGGAAACTGAGGCGTATTACGCGTTCAGTGAAGCAAGCAAGGTGCTGAGATCGAAAGGCTGCTCTGTCATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTGGCTCCTGTTGACCAAGTCATGGTGAAGCGGATCGGAAATCTGAGCGAGTACTCGTCGATCTTGCGCCGCCACGTGGTCCCCTGCCGGCTTTCTTGGAGCGATTTGAAGAGTCTTGAGGATGGGACTCTGTTGAGGACTAATTTGCAAGGGTTTATGATCAACGTGAGTCGATACGACACCGTTTTTGTGCTCAATGGGGTCCCGGTGATTATGCCGGAGCTGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAACTTCCAGTGAGCCTAACTCAGAGCCCAATTCAGAGTCAAACGGAGCCAGTGGTGGATACGGTCGATCCGGTGGCTTCTTCACCTCCCTCTCCGACACTTCATCGCAGTTCCGGTGAGGTTCTTTGTTTGCAGGCCTTCACAATCTTGCATCCTTTCTCCCAACATCAAGAAGGACTTGCTTTAGGTTACCCACGTCTAGCATCGCTTGAAAAGTACCTGCAAGCGTTATCTAACTTTTTCTCAAGCGCCGACCTTATTGAGTTTCTTGAGCCTGATCGATATTGTTGCCTGCTGCTTGAGCTTGCTGAGATTGAAGTGCCTGTTGCAATGCTGCTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

250

Amino Acids

27.93

Weight (kDa)

5.04

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 24 - 136 8.7e-09 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 636
AccB7I CCANNNNNTGG 1 cut(s) 160
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 5, 169, 208
AclWI GGATC 2 cut(s) 179, 470
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 3 cut(s) 119, 191, 626
AfiI CCNNNNNNNGG 2 cut(s) 160, 214
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 92, 247, 410, 620, 725
AjiI CACGTC 1 cut(s) 605
AluBI AGCT 2 cut(s) 361, 712
AluI AGCT 2 cut(s) 361, 712
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 179, 470
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 3 cut(s) 66, 703, 742
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 2 cut(s) 207, 659
AspS9I GGNCC 2 cut(s) 217, 340
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 175, 358, 483, 536
AvaII GGWCC 2 cut(s) 217, 340
BanII GRGCYC 1 cut(s) 437
BbrPI CACGTG 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 53, 690, 729
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 3 cut(s) 608, 746, 751
BfoI RGCGCY 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 636
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 4 cut(s) 67, 208, 704, 743
BlsI GCNGC 4 cut(s) 68, 209, 705, 744
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 2 cut(s) 217, 340
BmgBI CACGTC 1 cut(s) 605
BmgT120I GGNCC 2 cut(s) 217, 340
BmiI GGNNCC 5 cut(s) 144, 219, 341, 342, 456
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 568, 620
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpuEI CTTGAG 5 cut(s) 98, 275, 637, 698, 728
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 688
BsaAI YACGTR 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 478, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 214
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 416, 458
Bse3DI GCAATG 1 cut(s) 744
BseCI ATCGAT 1 cut(s) 688
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 265, 559
BseLI CCNNNNNNNGG 2 cut(s) 160, 214
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 5 cut(s) 6, 44, 173, 443, 708
BseNI ACTGG 2 cut(s) 416, 458
BseXI GCAGC 3 cut(s) 53, 690, 729
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 1 cut(s) 545
BshVI ATCGAT 1 cut(s) 688
BsiEI CGRYCG 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 5 cut(s) 226, 344, 356, 479, 522
BslFI GGGAC 3 cut(s) 203, 277, 326
BslI CCNNNNNNNGG 2 cut(s) 160, 214
BsmFI GGGAC 3 cut(s) 203, 277, 326
BsnI GGCC 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 333, 437
Bsp143I GATC 6 cut(s) 56, 171, 198, 297, 475, 685
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 5, 169, 208
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 5 cut(s) 7, 45, 174, 442, 709
BspDI ATCGAT 1 cut(s) 688
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 5 cut(s) 144, 219, 341, 342, 456
BspMI ACCTGC 1 cut(s) 636
BspPI GGATC 2 cut(s) 179, 470
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 416, 458
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 6 cut(s) 56, 171, 198, 297, 475, 685
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 136, 322, 472
Bst6I CTCTTC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 7 cut(s) 43, 227, 377, 543, 633, 701, 714
BstDEI CTNAG 5 cut(s) 15, 53, 182, 429, 717
BstDSI CCRYGG 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 2 cut(s) 265, 559
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 207, 659
BstKTI GATC 6 cut(s) 59, 174, 201, 300, 478, 688
BstMBI GATC 6 cut(s) 56, 171, 198, 297, 475, 685
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 2 cut(s) 26, 709
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 342
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 53, 690, 729
Bsu15I ATCGAT 1 cut(s) 688
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 545
BsuTUI ATCGAT 1 cut(s) 688
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 2 cut(s) 497, 597
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 2 cut(s) 265, 559
BtsIMutI CAGTG 4 cut(s) 40, 403, 423, 465
BveI ACCTGC 1 cut(s) 636
Cac8I GCNNGC 7 cut(s) 43, 227, 377, 543, 633, 701, 714
CfoI GCGC 2 cut(s) 207, 659
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 217, 340
ClaI ATCGAT 1 cut(s) 688
Csp6I GTAC 3 cut(s) 118, 190, 625
CviAII CATG 4 cut(s) 76, 104, 127, 160
CviQI GTAC 3 cut(s) 118, 190, 625
DdeI CTNAG 5 cut(s) 15, 53, 182, 429, 717
DpnI GATC 6 cut(s) 58, 173, 200, 299, 477, 687
DpnII GATC 6 cut(s) 56, 171, 198, 297, 475, 685
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 217, 340
Eco72I CACGTG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 4 cut(s) 79, 107, 130, 163
FaiI YATR 6 cut(s) 77, 105, 128, 161, 296, 353
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 3 cut(s) 203, 277, 326
FatI CATG 4 cut(s) 75, 103, 126, 159
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 67, 208, 704, 743
FokI GGATG 2 cut(s) 272, 546
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 67, 208, 704, 743
FspBI CTAG 3 cut(s) 608, 746, 751
GlaI GCGC 2 cut(s) 206, 658
GluI GCNGC 4 cut(s) 67, 208, 704, 743
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 1 cut(s) 545
HapII CCGG 5 cut(s) 226, 344, 356, 479, 522
HhaI GCGC 2 cut(s) 207, 659
Hin1II CATG 4 cut(s) 79, 107, 130, 163
Hin6I GCGC 2 cut(s) 205, 657
HinP1I GCGC 2 cut(s) 205, 657
HincII GTYRAC 2 cut(s) 132, 151
HindII GTYRAC 2 cut(s) 132, 151
HinfI GANTC 5 cut(s) 250, 265, 307, 393, 445
HpaII CCGG 5 cut(s) 226, 344, 356, 479, 522
HphI GGTGA 4 cut(s) 175, 358, 483, 536
Hpy166II GTNNAC 3 cut(s) 132, 151, 388
Hpy188I TCNGA 5 cut(s) 176, 183, 432, 444, 504
Hpy188III TCNNGA 5 cut(s) 89, 254, 407, 578, 677
Hpy8I GTNNAC 3 cut(s) 132, 151, 388
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 556, 575
HpyCH4III ACNGT 3 cut(s) 136, 322, 472
HpyCH4IV ACGT 3 cut(s) 213, 303, 604
HpyCH4V TGCA 6 cut(s) 97, 286, 541, 559, 631, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 709
HpyF3I CTNAG 5 cut(s) 15, 53, 182, 429, 717
HpySE526I ACGT 3 cut(s) 213, 303, 604
Hsp92II CATG 4 cut(s) 79, 107, 130, 163
HspAI GCGC 2 cut(s) 205, 657
KflI GGGWCCC 1 cut(s) 340
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 6 cut(s) 56, 171, 198, 297, 475, 685
LmnI GCTCC 4 cut(s) 148, 237, 358, 454
Lsp1109I GCAGC 3 cut(s) 53, 690, 729
LweI GCATC 2 cut(s) 568, 620
MaeI CTAG 3 cut(s) 608, 746, 751
MaeII ACGT 3 cut(s) 213, 303, 604
MaeIII GTNAC 1 cut(s) 596
MalI GATC 6 cut(s) 58, 173, 200, 299, 477, 687
MboI GATC 6 cut(s) 56, 171, 198, 297, 475, 685
MboII GAAGA 2 cut(s) 259, 480
MhlI GDGCHC 2 cut(s) 333, 437
MluCI AATT 3 cut(s) 98, 280, 438
MluI ACGCGT 1 cut(s) 27
MlyI GAGTC 4 cut(s) 259, 259, 316, 454
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 7 cut(s) 10, 250, 267, 394, 504, 508, 520
MroNI GCCGGC 1 cut(s) 225
MspI CCGG 5 cut(s) 226, 344, 356, 479, 522
MspR9I CCNGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 26, 709
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 103
NdeII GATC 6 cut(s) 56, 171, 198, 297, 475, 685
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 4 cut(s) 79, 107, 130, 163
NlaIV GGNNCC 5 cut(s) 144, 219, 341, 342, 456
PceI AGGCCT 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 393
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 4 cut(s) 68, 209, 705, 744
PleI GAGTC 4 cut(s) 258, 259, 315, 453
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 4 cut(s) 258, 259, 315, 453
Ppu21I YACGTR 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
PspCI CACGTG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 596
PspN4I GGNNCC 5 cut(s) 144, 219, 341, 342, 456
PspPI GGNCC 2 cut(s) 217, 340
PspPPI RGGWCCY 1 cut(s) 340
PsrI GAACNNNNNNTAC 2 cut(s) 14, 46
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 3 cut(s) 119, 191, 626
RsaNI GTAC 3 cut(s) 118, 190, 625
SatI GCNGC 4 cut(s) 67, 208, 704, 743
Sau3AI GATC 6 cut(s) 56, 171, 198, 297, 475, 685
Sau96I GGNCC 2 cut(s) 217, 340
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 4 cut(s) 259, 259, 316, 454
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 333, 437
SfaNI GCATC 2 cut(s) 568, 620
SinI GGWCC 2 cut(s) 217, 340
SmlI CTYRAG 5 cut(s) 113, 254, 652, 677, 707
SmoI CTYRAG 5 cut(s) 113, 254, 652, 677, 707
Sse9I AATT 3 cut(s) 98, 280, 438
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 3 cut(s) 5, 169, 208
SspMI CTAG 3 cut(s) 608, 746, 751
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 136, 322, 472
TaiI ACGT 3 cut(s) 216, 306, 607
TaqI TCGA 5 cut(s) 59, 197, 310, 474, 688
TasI AATT 3 cut(s) 98, 280, 438
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 393
TscAI CASTG 4 cut(s) 40, 403, 423, 465
TseI GCWGC 3 cut(s) 66, 703, 742
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 2 cut(s) 405, 467
TspRI CASTG 4 cut(s) 40, 403, 423, 465
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 217, 340
XspI CTAG 3 cut(s) 608, 746, 751
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.