Rmu_ssc0000175.1_g000015

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
OG0000614
Physical Location & Seq
Reverse (-)
51073 .. 51345
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000015.1.cds

Sequence Viewer

Length: 273 bp
ctgctctccatcaaaaccctaccctacctccaccgtggcaccaaaatccagactctgctccccaattactcactcaccgtgacttcgtctcctgcttccgaaggctattcgttggtcaacgacgttcgggtcgacccgaattcggttctggacgacgagtgggtgatcatatacgccgtcgatcggttctttaacttgactttcttggaggctgaagaagctgcggcactggctctgatcgctggaatttcaggtcggttgcgaatctgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

4.87

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 224
AcsI RAATTY 2 cut(s) 139, 246
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 142, 183
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 139, 246
AsuHPI GGTGA 2 cut(s) 67, 175
BanI GGYRCC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 161
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
BmiI GGNNCC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 183
Bse1I ACTGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 142, 183
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 142, 183
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 165, 181, 237
BspACI CCGC 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 165, 181, 237
Bst4CI ACNGT 2 cut(s) 35, 79
BstDSI CCRYGG 1 cut(s) 34
BstKTI GATC 3 cut(s) 168, 184, 240
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 165, 181, 237
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 218, 230, 239
BstV1I GCAGC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 227
CaiI CAGNNNCTG 1 cut(s) 55
CviJI RGCY 4 cut(s) 105, 212, 221, 233
CviKI_1 RGCY 4 cut(s) 105, 212, 221, 233
DpnI GATC 3 cut(s) 167, 183, 239
DpnII GATC 3 cut(s) 165, 181, 237
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 2 cut(s) 170, 172
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 222, 225
Fsp4HI GCNGC 2 cut(s) 222, 225
GluI GCNGC 2 cut(s) 222, 225
HincII GTYRAC 2 cut(s) 118, 133
HindII GTYRAC 2 cut(s) 118, 133
HinfI GANTC 2 cut(s) 52, 264
HphI GGTGA 2 cut(s) 67, 175
Hpy166II GTNNAC 2 cut(s) 118, 133
Hpy188I TCNGA 2 cut(s) 100, 237
Hpy188III TCNNGA 2 cut(s) 49, 149
Hpy8I GTNNAC 2 cut(s) 118, 133
Hpy99I CGWCG 3 cut(s) 125, 158, 182
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 35, 79
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 230, 239
HpySE526I ACGT 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 165, 181, 237
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 62, 105, 134, 215, 228, 237
Lsp1109I GCAGC 1 cut(s) 208
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 167, 183, 239
MboI GATC 3 cut(s) 165, 181, 237
MboII GAAGA 1 cut(s) 227
MluCI AATT 3 cut(s) 64, 139, 246
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 2 cut(s) 38, 202
MseI TTAA 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 218, 230, 239
NdeII GATC 3 cut(s) 165, 181, 237
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 223, 226
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 85
PvuI CGATCG 1 cut(s) 184
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 222, 225
Sau3AI GATC 3 cut(s) 165, 181, 237
SchI GAGTC 1 cut(s) 46
SetI ASST 4 cut(s) 30, 126, 223, 256
Sse9I AATT 3 cut(s) 64, 139, 246
SsiI CCGC 1 cut(s) 224
TaaI ACNGT 2 cut(s) 35, 79
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 132, 180
TasI AATT 3 cut(s) 64, 139, 246
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 79
TspRI CASTG 1 cut(s) 234
Tth111I GACNNNGTC 1 cut(s) 85
XapI RAATTY 2 cut(s) 139, 246
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.