Rmu_sc0027146.1_g000001

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027146.1
OG0000614
Physical Location & Seq
Reverse (-)
2 .. 556
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027146.1_g000001.1.cds

Sequence Viewer

Length: 500 bp
atggctctcactctcgaggccgtctctcagtccctcgtccccaagtcgccgtcgctcaccatcttcgctccgcgggactccgccttcaagagagctggccagccctccctctctctcctccaattccacttcgcccctctcgctctcgccctccaaaccctaaaatcgctccccgccggcaccaagatcccgactcctcttcggcagctccctctttgtcacctcgcctccttccggcaccggaatttctctcaatggcgtcaggtcgaggacttcttcgacccgaacttccatgctcccgcctggaccagaattccggtcccggatccaatgtgtgagtctccttcgtcgaacggtacaagcacgattgggtttctggcggcttcttggtttgaaagagccagaggcgtgatgaggtccaatggatacatagtgatggcttcatttcttgatctgcagctcatgggggttcaagaaccctctgagttcgttgaccgtta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

166

Amino Acids

18.46

Weight (kDa)

9.23

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 237
AccII CGCG 1 cut(s) 73
AciI CCGC 6 cut(s) 71, 73, 81, 174, 300, 380
AclWI GGATC 3 cut(s) 181, 320, 333
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 244, 312
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 3 cut(s) 88, 395, 473
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 3 cut(s) 95, 208, 460
AluI AGCT 3 cut(s) 95, 208, 460
Alw26I GTCTC 2 cut(s) 28, 345
AlwI GGATC 3 cut(s) 181, 320, 333
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 18, 97
ApeKI GCWGC 2 cut(s) 205, 457
ApoI RAATTY 2 cut(s) 244, 312
AspS9I GGNCC 3 cut(s) 306, 319, 417
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 49, 212
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 3 cut(s) 306, 319, 417
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 179, 237
BbvI GCAGC 2 cut(s) 217, 469
BccI CCATC 2 cut(s) 68, 430
BceAI ACGGC 2 cut(s) 5, 34
BciT130I CCWGG 1 cut(s) 304
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 28, 345
BfmI CTRYAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 3 cut(s) 206, 381, 458
BlsI GCNGC 3 cut(s) 207, 382, 459
Bme1390I CCNGG 2 cut(s) 304, 323
Bme18I GGWCC 3 cut(s) 306, 319, 417
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 306, 319, 417
BmiI GGNNCC 4 cut(s) 181, 239, 321, 327
BmrFI CCNGG 2 cut(s) 304, 323
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpuMI CCSGG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 2 cut(s) 240, 316
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 41, 474
BseRI GAGGAG 2 cut(s) 107, 186
BseXI GCAGC 2 cut(s) 217, 469
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 20, 99
BshNI GGYRCC 2 cut(s) 179, 237
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 5 cut(s) 177, 235, 241, 317, 323
BslFI GGGAC 4 cut(s) 16, 23, 89, 305
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 28, 345
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 4 cut(s) 16, 23, 89, 305
BsnI GGCC 2 cut(s) 20, 99
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 3 cut(s) 186, 325, 451
BspACI CCGC 6 cut(s) 71, 73, 81, 174, 300, 380
BspANI GGCC 2 cut(s) 20, 99
BspCNI CTCAG 2 cut(s) 40, 475
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 4 cut(s) 181, 239, 321, 327
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 3 cut(s) 181, 320, 333
BspT107I GGYRCC 2 cut(s) 179, 237
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 3 cut(s) 186, 325, 451
BssNI GRCGYC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 356, 497
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 97, 101, 178
BstDEI CTNAG 2 cut(s) 27, 483
BstDSI CCRYGG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 3 cut(s) 189, 328, 454
BstMAI GTCTC 2 cut(s) 28, 345
BstMBI GATC 3 cut(s) 186, 325, 451
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 302, 321
BstSFI CTRYAG 1 cut(s) 455
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 217, 469
BstX2I RGATCY 2 cut(s) 186, 325
BstYI RGATCY 2 cut(s) 186, 325
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 20, 99
BtgI CCRYGG 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 97, 101, 178
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 306, 319, 417
Cfr42I CCGCGG 1 cut(s) 74
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 293, 463
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 27, 483
DpnI GATC 3 cut(s) 188, 327, 453
DpnII GATC 3 cut(s) 186, 325, 451
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 306, 319, 417
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 296, 466
FaiI YATR 3 cut(s) 294, 431, 464
FaqI GGGAC 4 cut(s) 16, 23, 89, 305
FatI CATG 2 cut(s) 292, 462
FauI CCCGC 3 cut(s) 66, 181, 307
Fnu4HI GCNGC 3 cut(s) 206, 381, 458
Fsp4HI GCNGC 3 cut(s) 206, 381, 458
GluI GCNGC 3 cut(s) 206, 381, 458
HaeIII GGCC 2 cut(s) 20, 99
HapII CCGG 5 cut(s) 177, 235, 241, 317, 323
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 2 cut(s) 296, 466
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 77, 193, 338
HpaII CCGG 5 cut(s) 177, 235, 241, 317, 323
HphI GGTGA 2 cut(s) 49, 212
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 5 cut(s) 14, 88, 190, 449, 473
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 2 cut(s) 55, 352
HpyAV CCTTC 3 cut(s) 94, 241, 354
HpyCH4III ACNGT 2 cut(s) 356, 497
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 27, 483
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 2 cut(s) 296, 466
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 3 cut(s) 186, 325, 451
LmnI GCTCC 4 cut(s) 73, 174, 213, 301
Lsp1109I GCAGC 2 cut(s) 217, 469
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 188, 327, 453
MboI GATC 3 cut(s) 186, 325, 451
MboII GAAGA 3 cut(s) 55, 191, 268
MflI RGATCY 2 cut(s) 186, 325
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 122, 244, 312
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 3 cut(s) 71, 187, 347
Mox20I TGGCCA 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 5 cut(s) 177, 235, 241, 317, 323
MspR9I CCNGG 2 cut(s) 304, 323
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 323
NdeII GATC 3 cut(s) 186, 325, 451
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 296, 466
NlaIV GGNNCC 4 cut(s) 181, 239, 321, 327
NmuCI GTSAC 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 3 cut(s) 207, 382, 459
PleI GAGTC 3 cut(s) 71, 187, 346
PpsI GAGTC 3 cut(s) 71, 187, 346
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 4 cut(s) 181, 239, 321, 327
PspPI GGNCC 3 cut(s) 306, 319, 417
PstI CTGCAG 1 cut(s) 459
PsuI RGATCY 2 cut(s) 186, 325
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 434
SacII CCGCGG 1 cut(s) 74
SatI GCNGC 3 cut(s) 206, 381, 458
Sau3AI GATC 3 cut(s) 186, 325, 451
Sau96I GGNCC 3 cut(s) 306, 319, 417
SchI GAGTC 3 cut(s) 71, 187, 347
ScrFI CCNGG 2 cut(s) 304, 323
SetI ASST 6 cut(s) 97, 210, 225, 267, 419, 462
SfcI CTRYAG 1 cut(s) 455
Sfr274I CTCGAG 1 cut(s) 14
Sfr303I CCGCGG 1 cut(s) 74
SgrBI CCGCGG 1 cut(s) 74
SinI GGWCC 3 cut(s) 306, 319, 417
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 122, 244, 312
SsiI CCGC 6 cut(s) 71, 73, 81, 174, 300, 380
StyD4I CCNGG 2 cut(s) 302, 321
TaaI ACNGT 2 cut(s) 356, 497
TaqI TCGA 4 cut(s) 15, 267, 279, 350
TasI AATT 3 cut(s) 122, 244, 312
TauI GCSGC 1 cut(s) 383
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 205, 457
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 432
VpaK11BI GGWCC 3 cut(s) 306, 319, 417
XapI RAATTY 2 cut(s) 244, 312
XhoI CTCGAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.