RLG00000036410

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000614
Physical Location & Seq
Reverse (-)
80244690 .. 80245028
339 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036410

Sequence Viewer

Length: 339 bp
ATGGATGCGTTTCTTGATGCCCAAATGATTGTGTTCAACCAGAATACGACGCTGATGGTTTTCATTGCTGTCAAAGACTACTCAAGGAACAGCTCCGATTACTCGGTGATTTTCAGGGAACGATGGTCCAGAAGCTGCTGTCGACTTTTGATCAAGATAGGTGACGTCCCTGTGCTCAATGATGTTCCAGTGGTCGATCAGGACCTATACCAGAGCTTCTTTCTGGTTGTTGATGGCCTCAATCGCTGGCTCATGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAATTGATCAAGAAGATGGTGGCGCTGATTTCACTTATGGGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

113

Amino Acids

12.98

Weight (kDa)

4.27

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 93, 135, 216
AluI AGCT 3 cut(s) 93, 135, 216
Alw21I GWGCWC 1 cut(s) 177
AlwNI CAGNNNCTG 1 cut(s) 135
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 135, 262
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 126, 202
AsuHPI GGTGA 3 cut(s) 118, 173, 283
AvaII GGWCC 2 cut(s) 126, 202
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 122, 274
BccI CCATC 4 cut(s) 49, 117, 227, 299
BclI TGATCA 2 cut(s) 150, 295
BfoI RGCGCY 1 cut(s) 315
BisI GCNGC 2 cut(s) 136, 263
BlsI GCNGC 2 cut(s) 137, 264
Bme18I GGWCC 2 cut(s) 126, 202
BmgT120I GGNCC 2 cut(s) 126, 202
BmsI GCATC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 63
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 122, 274
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 150, 196, 295
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 188
BssMI GATC 3 cut(s) 150, 196, 295
BssNI GRCGYC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 3 cut(s) 153, 199, 298
BstMBI GATC 3 cut(s) 150, 196, 295
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 122, 274
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 248
CaiI CAGNNNCTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 126, 202
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 253
CviJI RGCY 5 cut(s) 93, 135, 216, 237, 250
CviKI_1 RGCY 5 cut(s) 93, 135, 216, 237, 250
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 152, 198, 297
DpnII GATC 3 cut(s) 150, 196, 295
Eco47I GGWCC 2 cut(s) 126, 202
EcoO109I RGGNCCY 1 cut(s) 202
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 208, 254, 327
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 252
FbaI TGATCA 2 cut(s) 150, 295
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 136, 263
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 136, 263
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 136, 263
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HphI GGTGA 3 cut(s) 118, 173, 283
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 97, 334
Hpy188III TCNNGA 5 cut(s) 14, 129, 154, 200, 299
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 312
Ksp22I TGATCA 2 cut(s) 150, 295
Kzo9I GATC 3 cut(s) 150, 196, 295
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 9 cut(s) 53, 100, 142, 183, 185, 201, 209, 224, 232
Lsp1109I GCAGC 2 cut(s) 122, 274
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 161, 255
MalI GATC 3 cut(s) 152, 198, 297
MboI GATC 3 cut(s) 150, 196, 295
MboII GAAGA 1 cut(s) 314
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 291
MnlI CCTC 2 cut(s) 248, 267
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 3 cut(s) 150, 196, 295
NlaIII CATG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 161, 255
PkrI GCNGC 2 cut(s) 137, 264
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
PspPI GGNCC 2 cut(s) 126, 202
PspPPI RGGWCCY 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 141
SatI GCNGC 2 cut(s) 136, 263
Sau3AI GATC 3 cut(s) 150, 196, 295
Sau96I GGNCC 2 cut(s) 126, 202
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 95, 137, 163, 168, 207, 218
SfaNI GCATC 1 cut(s) 7
SinI GGWCC 2 cut(s) 126, 202
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 1 cut(s) 291
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 142, 195
TasI AATT 1 cut(s) 291
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 161, 255
TseI GCWGC 2 cut(s) 135, 262
Tsp45I GTSAC 2 cut(s) 161, 255
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 126, 202
XmiI GTMKAC 1 cut(s) 142
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.