Rw2G054570

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
82158070 .. 82159344
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054570.1

Sequence Viewer

Length: 972 bp
ATGAAAACCTCTCCCATGGCCACCTCGCTTCTCCTCTTTCTGATTCTCCTCTCCCTCTCTTCCTCCGCCGTCGCTTCCTCCGCCACCCTCCTCCTCACCGCCGCCAACACCCTCTCCAACTCCGGCTACCTCTCCATGGCCCTCACCCTCCAGCTCGCCGCCAGCGCCGGCCTCAACTTCGACTCTCCCACCTCGGGCCCACCCTCGCTGCCTCTGCTCCTGTACCACATCTCGCCGCGACGATTCTCCGTCAAAACCCTACCCTACCTCCACCGCGGCACCAAAATCCAGACTCTGCTCCCGAATTACTCACTCACCGTGACTTCGTCTCCGGCCGTCGAAGGCTGCTCGTCTGTCAACGACGTTCGGGTCGACCTCTTTAACTTGACTTTCTTGGAGGCTGAAGAAGCTCCGGCGCCGGCTCCGATCGCTGGAATTTCGGGACAGCCGCACCGGCCGTTCGGGTCGGTTGCGGATCTGCTGAGGTCCAAAGGCTGTTCGATCATGGCCGCGTTTCTTGACACCCAGCTGATCGGGTTCAACCGGAAGACGGCACTGACTGTGTTCGCAGCGGTCGACGACGCCGTCGAAGACTACGCAAGGAACAGCTCCGATTACTCGGAGATTTTCCGGCAGCACGTGGTGCCGAGGCTGCTGACGTGGCAAGACCTGGTGGCGCTTGATGACGGGACGATGCTGCCGACTTTTGAAGAAGGGTTTATGATCCATGTGATCAAGATGGGTGACGTACCTGTGCTCAATGATGTTCCGGTGGCCGATCAGGACCTCTACCAGAGCCGCTTCCTGGTTGTTCATGGCGTCAATCACTTGCTGACGTCACAGAAGCAGATGGTGAGGCAAGAAGAAGACCCGGTTGGAGATCAAGAAGATGGTGGTGCTGGTTTCACTGATGGGTTTGTTGCCAATGTTGCTGATCAGATCAACCCTCAAGGTTTTGATGACTATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

323

Amino Acids

34.87

Weight (kDa)

4.76

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 368, 584
AatII GACGTC 1 cut(s) 839
AccB1I GGYRCC 3 cut(s) 278, 415, 643
AccI GTMKAC 2 cut(s) 372, 576
AccII CGCG 3 cut(s) 238, 276, 512
AclWI GGATC 2 cut(s) 483, 718
AcoI YGGCCR 5 cut(s) 18, 333, 455, 507, 774
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 423
AcvI CACGTG 1 cut(s) 640
AcyI GRCGYC 4 cut(s) 416, 582, 819, 836
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 2 cut(s) 224, 750
AfiI CCNNNNNNNGG 5 cut(s) 136, 194, 431, 550, 805
AgsI TTSAA 2 cut(s) 541, 710
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 2 cut(s) 669, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AluBI AGCT 4 cut(s) 154, 410, 529, 609
AluI AGCT 4 cut(s) 154, 410, 529, 609
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 483, 718
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 8 cut(s) 18, 138, 169, 196, 333, 455, 507, 774
ApaI GGGCCC 1 cut(s) 200
ApeKI GCWGC 6 cut(s) 208, 345, 569, 634, 652, 697
ApoI RAATTY 1 cut(s) 435
AspLEI GCGC 3 cut(s) 167, 418, 679
AspS9I GGNCC 5 cut(s) 139, 196, 197, 486, 784
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 5 cut(s) 88, 136, 307, 755, 865
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 2 cut(s) 486, 784
BaeGI GKGCMC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 3 cut(s) 278, 415, 643
BanII GRGCYC 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 640
BbsI GAAGAC 3 cut(s) 554, 597, 873
Bbv12I GWGCWC 1 cut(s) 759
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 6 cut(s) 195, 332, 581, 639, 646, 684
BccI CCATC 4 cut(s) 733, 844, 884, 905
BceAI ACGGC 5 cut(s) 53, 320, 442, 567, 569
BciT130I CCWGG 2 cut(s) 671, 806
BclI TGATCA 2 cut(s) 732, 934
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 1 cut(s) 333
BfoI RGCGCY 3 cut(s) 168, 419, 680
BglI GCCNNNNNGGC 1 cut(s) 454
Bme1390I CCNGG 3 cut(s) 671, 806, 872
Bme18I GGWCC 2 cut(s) 486, 784
BmeT110I CYCGRG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 5 cut(s) 139, 196, 197, 486, 784
BmiI GGNNCC 5 cut(s) 198, 280, 417, 423, 645
BmrFI CCNGG 3 cut(s) 671, 806, 872
BmsI GCATC 1 cut(s) 684
BpiI GAAGAC 3 cut(s) 554, 597, 873
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 640
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 4 cut(s) 416, 582, 819, 836
BsaJI CCNNGG 5 cut(s) 15, 135, 192, 274, 647
BsaWI WCCGGW 2 cut(s) 543, 769
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 252, 282, 313, 343
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 194, 431, 550, 805
Bse118I RCCGGY 3 cut(s) 167, 418, 453
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 2 cut(s) 671, 806
BseDI CCNNGG 5 cut(s) 15, 135, 192, 274, 647
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 5 cut(s) 136, 194, 431, 550, 805
BseMII CTCAG 1 cut(s) 473
BseRI GAGGAG 4 cut(s) 23, 38, 80, 83
BseSI GKGCMC 1 cut(s) 200
BseX3I CGGCCG 2 cut(s) 333, 455
BseXI GCAGC 6 cut(s) 195, 332, 581, 639, 646, 684
BseYI CCCAGC 1 cut(s) 525
Bsh1236I CGCG 3 cut(s) 238, 276, 512
Bsh1285I CGRYCG 4 cut(s) 336, 429, 458, 576
BshFI GGCC 8 cut(s) 20, 140, 171, 198, 335, 457, 509, 776
BshNI GGYRCC 3 cut(s) 278, 415, 643
BsiEI CGRYCG 4 cut(s) 336, 429, 458, 576
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 456, 703
BslI CCNNNNNNNGG 5 cut(s) 136, 194, 431, 550, 805
BsmAI GTCTC 1 cut(s) 333
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 456, 703
BsnI GGCC 8 cut(s) 20, 140, 171, 198, 335, 457, 509, 776
BsoBI CYCGRG 1 cut(s) 193
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 200, 759
Bsp19I CCATGG 2 cut(s) 15, 135
BspANI GGCC 8 cut(s) 20, 140, 171, 198, 335, 457, 509, 776
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 3 cut(s) 238, 276, 512
BspLI GGNNCC 5 cut(s) 198, 280, 417, 423, 645
BspPI GGATC 2 cut(s) 483, 718
BspT107I GGYRCC 3 cut(s) 278, 415, 643
BsrFI RCCGGY 3 cut(s) 167, 418, 453
BssAI RCCGGY 3 cut(s) 167, 418, 453
BssECI CCNNGG 5 cut(s) 15, 135, 192, 274, 647
BssNI GRCGYC 4 cut(s) 416, 582, 819, 836
BssT1I CCWWGG 2 cut(s) 15, 135
Bst2UI CCWGG 2 cut(s) 671, 806
Bst4CI ACNGT 2 cut(s) 319, 562
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 4 cut(s) 416, 582, 819, 836
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 4 cut(s) 156, 163, 169, 420
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 3 cut(s) 15, 135, 274
BstFNI CGCG 3 cut(s) 238, 276, 512
BstH2I RGCGCY 3 cut(s) 168, 419, 680
BstHHI GCGC 3 cut(s) 167, 418, 679
BstMAI GTCTC 1 cut(s) 333
BstMCI CGRYCG 4 cut(s) 336, 429, 458, 576
BstNI CCWGG 2 cut(s) 671, 806
BstSCI CCNGG 3 cut(s) 669, 804, 870
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 3 cut(s) 238, 276, 512
BstV1I GCAGC 6 cut(s) 195, 332, 581, 639, 646, 684
BstV2I GAAGAC 3 cut(s) 554, 597, 873
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZI CGGCCG 2 cut(s) 333, 455
BsuRI GGCC 8 cut(s) 20, 140, 171, 198, 335, 457, 509, 776
BtgI CCRYGG 3 cut(s) 15, 135, 274
BtrI CACGTC 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 554, 906, 967
Cac8I GCNNGC 4 cut(s) 156, 163, 169, 420
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 3 cut(s) 167, 418, 679
Cfr10I RCCGGY 3 cut(s) 167, 418, 453
Cfr13I GGNCC 5 cut(s) 139, 196, 197, 486, 784
Cfr42I CCGCGG 1 cut(s) 277
CseI GACGC 2 cut(s) 590, 808
CsiI ACCWGGT 1 cut(s) 669
Csp6I GTAC 2 cut(s) 223, 749
CviAII CATG 5 cut(s) 16, 136, 505, 728, 815
CviQI GTAC 2 cut(s) 223, 749
DdeI CTNAG 1 cut(s) 482
DinI GGCGCC 1 cut(s) 417
DraIII CACNNNGTG 1 cut(s) 643
DrdI GACNNNNNNGTC 2 cut(s) 368, 584
DseDI GACNNNNNNGTC 2 cut(s) 368, 584
EaeI YGGCCR 5 cut(s) 18, 333, 455, 507, 774
EagI CGGCCG 2 cut(s) 333, 455
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EciI GGCGGA 2 cut(s) 55, 70
EclXI CGGCCG 2 cut(s) 333, 455
Eco130I CCWWGG 2 cut(s) 15, 135
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 486, 784
Eco52I CGGCCG 2 cut(s) 333, 455
Eco57I CTGAAG 1 cut(s) 423
Eco72I CACGTG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 669, 804
EcoT14I CCWWGG 2 cut(s) 15, 135
EcoT38I GRGCYC 1 cut(s) 200
EgeI GGCGCC 1 cut(s) 417
EheI GGCGCC 1 cut(s) 417
ErhI CCWWGG 2 cut(s) 15, 135
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 19, 139, 508, 731, 818
FaiI YATR 6 cut(s) 17, 137, 506, 722, 729, 816
FaqI GGGAC 2 cut(s) 456, 703
FatI CATG 5 cut(s) 15, 135, 504, 727, 814
FbaI TGATCA 2 cut(s) 732, 934
FblI GTMKAC 2 cut(s) 372, 576
FriOI GRGCYC 1 cut(s) 200
GlaI GCGC 3 cut(s) 166, 417, 678
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 3 cut(s) 168, 419, 680
HaeIII GGCC 8 cut(s) 20, 140, 171, 198, 335, 457, 509, 776
HgaI GACGC 2 cut(s) 590, 808
HhaI GCGC 3 cut(s) 167, 418, 679
Hin1I GRCGYC 4 cut(s) 416, 582, 819, 836
Hin1II CATG 5 cut(s) 19, 139, 508, 731, 818
Hin6I GCGC 3 cut(s) 165, 416, 677
HinP1I GCGC 3 cut(s) 165, 416, 677
HincII GTYRAC 3 cut(s) 358, 373, 577
HindII GTYRAC 3 cut(s) 358, 373, 577
HinfI GANTC 4 cut(s) 43, 182, 243, 292
HphI GGTGA 5 cut(s) 88, 136, 307, 755, 865
Hpy166II GTNNAC 3 cut(s) 358, 373, 577
Hpy188I TCNGA 5 cut(s) 42, 426, 613, 622, 939
Hpy188III TCNNGA 7 cut(s) 289, 301, 441, 518, 736, 782, 884
Hpy8I GTNNAC 3 cut(s) 358, 373, 577
Hpy99I CGWCG 7 cut(s) 74, 243, 341, 365, 581, 584, 590
HpyAV CCTTC 2 cut(s) 335, 707
HpyCH4III ACNGT 2 cut(s) 319, 562
HpyCH4IV ACGT 5 cut(s) 363, 639, 659, 747, 836
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 5 cut(s) 363, 639, 659, 747, 836
Hsp92I GRCGYC 4 cut(s) 416, 582, 819, 836
Hsp92II CATG 5 cut(s) 19, 139, 508, 731, 818
HspAI GCGC 3 cut(s) 165, 416, 677
KasI GGCGCC 1 cut(s) 415
KroI GCCGGC 2 cut(s) 167, 418
KroNI GCCGGC 2 cut(s) 169, 420
Ksp22I TGATCA 2 cut(s) 732, 934
KspI CCGCGG 1 cut(s) 277
LmnI GCTCC 5 cut(s) 222, 303, 415, 427, 614
Lsp1109I GCAGC 6 cut(s) 195, 332, 581, 639, 646, 684
LweI GCATC 1 cut(s) 684
MabI ACCWGGT 1 cut(s) 669
MaeII ACGT 5 cut(s) 363, 639, 659, 747, 836
MaeIII GTNAC 3 cut(s) 319, 743, 837
MboII GAAGA 8 cut(s) 51, 416, 559, 602, 722, 875, 878, 899
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 200, 759
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 304, 435
MluNI TGGCCA 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 416
MlyI GAGTC 2 cut(s) 176, 286
MmeI TCCRAC 2 cut(s) 141, 856
Mox20I TGGCCA 1 cut(s) 20
MroNI GCCGGC 2 cut(s) 167, 418
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 276, 529, 572
MspR9I CCNGG 3 cut(s) 671, 806, 872
MvaI CCWGG 2 cut(s) 671, 806
MvnI CGCG 3 cut(s) 238, 276, 512
NaeI GCCGGC 2 cut(s) 169, 420
NarI GGCGCC 1 cut(s) 416
NciI CCSGG 1 cut(s) 872
NcoI CCATGG 2 cut(s) 15, 135
NgoMIV GCCGGC 2 cut(s) 167, 418
NlaIII CATG 5 cut(s) 19, 139, 508, 731, 818
NlaIV GGNNCC 5 cut(s) 198, 280, 417, 423, 645
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 3 cut(s) 319, 743, 837
PcsI WCGNNNNNNNCGW 5 cut(s) 369, 573, 582, 585, 698
PdiI GCCGGC 2 cut(s) 169, 420
PfeI GAWTC 2 cut(s) 43, 243
PflFI GACNNNGTC 2 cut(s) 325, 584
Ple19I CGATCG 1 cut(s) 429
PleI GAGTC 2 cut(s) 176, 286
PluTI GGCGCC 1 cut(s) 419
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
PpsI GAGTC 2 cut(s) 176, 286
Ppu21I YACGTR 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 784
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 669, 804
PspCI CACGTG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 669, 804
PspN4I GGNNCC 5 cut(s) 198, 280, 417, 423, 645
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 5 cut(s) 139, 196, 197, 486, 784
PspPPI RGGWCCY 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 2 cut(s) 325, 584
PvuI CGATCG 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 2 cut(s) 224, 750
RsaNI GTAC 2 cut(s) 223, 749
SacII CCGCGG 1 cut(s) 277
SalI GTCGAC 2 cut(s) 371, 575
SaqAI TTAA 1 cut(s) 381
Sau96I GGNCC 5 cut(s) 139, 196, 197, 486, 784
SchI GAGTC 2 cut(s) 176, 286
ScrFI CCNGG 3 cut(s) 671, 806, 872
SduI GDGCHC 2 cut(s) 200, 759
SexAI ACCWGGT 1 cut(s) 669
SfaNI GCATC 1 cut(s) 684
SfoI GGCGCC 1 cut(s) 417
Sfr303I CCGCGG 1 cut(s) 277
SgrBI CCGCGG 1 cut(s) 277
SinI GGWCC 2 cut(s) 486, 784
SmlI CTYRAG 1 cut(s) 948
SmoI CTYRAG 1 cut(s) 948
Sse9I AATT 2 cut(s) 304, 435
SspDI GGCGCC 1 cut(s) 415
StyD4I CCNGG 3 cut(s) 669, 804, 870
StyI CCWWGG 2 cut(s) 15, 135
TaaI ACNGT 2 cut(s) 319, 562
TaiI ACGT 5 cut(s) 366, 642, 662, 750, 839
TaqI TCGA 6 cut(s) 180, 339, 372, 500, 576, 588
TasI AATT 2 cut(s) 304, 435
TauI GCSGC 7 cut(s) 104, 161, 238, 279, 451, 512, 801
TfiI GAWTC 2 cut(s) 43, 243
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 561, 913
TseFI GTSAC 3 cut(s) 319, 743, 837
TseI GCWGC 6 cut(s) 208, 345, 569, 634, 652, 697
Tsp45I GTSAC 3 cut(s) 319, 743, 837
TspDTI ATGAA 2 cut(s) 17, 803
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 561, 913
Tth111I GACNNNGTC 2 cut(s) 325, 584
VpaK11BI GGWCC 2 cut(s) 486, 784
XapI RAATTY 1 cut(s) 435
XmiI GTMKAC 2 cut(s) 372, 576
ZraI GACGTC 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.