FvH4_7g12190

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000614
Physical Location & Seq
Reverse (-)
11075957 .. 11077277
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12190.t1

Sequence Viewer

Length: 966 bp
ATGGCTTCTTCTTCAACCTCACTCTTCTTCTCTCTCCTCCTCTCTCTCCTCTCCGTCTCCTCCGCCCAAACCGTCACCAGAGCCGCCGAGTCTCCGACGTCGATCACCGTCTTCGCTCCGGCCGAAGCCGCCTTCTCCACCTCCGGCCAGCCCAATCTGGACCTCATCCGCCTCCACCTCCTCCCCGTCGCCTTCCCTCTCCGATCACTCAAGTCCCTCCCTTTCGGCGCCAAGATCGCGACTCTCCTCGACGGCCACTCCCTCACCGTCACCACTCTCCCCGCCGACGGCCTCGTATCGCTCAACAACGTCACCGTCACGGCGACTCCAGTCTTCGACGACGGCTCGTTGATCATCTTCGGAATCGACAGGTTCTTCTCCCGGTATTTCCGGATCTCAGGTACGATTCCCAAGATTCTCGGCGGCTGCTTGGCGCCGCGAAACCCTAACGAAGCGACGGCGGCGTTTGGTGAAGCAAGCGAGGTGCTGAGGTCGAACGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGCTTTCGCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCGGGTCATGGCACACCGGATCGGAGATCTGAGCCGGTACTCGTCGGTCTTGCGGCGCCACGTCGTCCCCTGCCGGCTTTCTTGGAGCGACTTGAAGAGTCTTGAGGATGGGAGTCTGCTGCGGACTGATTTGCAAGGGTTCGTGATCAACGTGAGTCGATACGACGGCGTTGTGGAGCTCAATGGGGTCTCGGTGATCATGCCGGAGATGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGGTGAACTTCCACAGAGCCCAACTGACAGTCGAACGGAGCCAAATCCAGTGGTGCCTTCTCCACCTCATGAGTCTCAGGGCAGCTCCGGTGAGTTTTTGTTTTCGACTGGTGTTAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

322

Amino Acids

34.65

Weight (kDa)

6.24

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 186 - 281 1e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 101
AccB1I GGYRCC 4 cut(s) 227, 433, 642, 895
AccII CGCG 2 cut(s) 239, 439
AccIII TCCGGA 1 cut(s) 390
AclWI GGATC 2 cut(s) 401, 614
AcoI YGGCCR 3 cut(s) 120, 145, 253
AcyI GRCGYC 4 cut(s) 98, 228, 434, 643
AfaI GTAC 3 cut(s) 403, 554, 626
AfiI CCNNNNNNNGG 3 cut(s) 287, 588, 595
AgsI TTSAA 3 cut(s) 15, 527, 682
AjiI CACGTC 1 cut(s) 649
AluBI AGCT 2 cut(s) 766, 927
AluI AGCT 2 cut(s) 766, 927
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 4 cut(s) 61, 96, 781, 921
AlwI GGATC 2 cut(s) 401, 614
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 4 cut(s) 120, 145, 253, 289
ApeKI GCWGC 4 cut(s) 426, 501, 706, 924
AspLEI GCGC 3 cut(s) 230, 436, 645
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 382, 590
AsuHPI GGTGA 9 cut(s) 67, 97, 256, 262, 304, 482, 793, 857, 944
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 4 cut(s) 227, 433, 642, 895
BanII GRGCYC 2 cut(s) 768, 863
BbsI GAAGAC 3 cut(s) 103, 325, 565
Bbv12I GWGCWC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 4 cut(s) 413, 488, 693, 936
BccI CCATC 1 cut(s) 689
BceAI ACGGC 8 cut(s) 268, 304, 336, 358, 474, 514, 769, 823
BclI TGATCA 3 cut(s) 351, 732, 783
BcnI CCSGG 2 cut(s) 382, 590
BcoDI GTCTC 4 cut(s) 61, 96, 781, 921
BfoI RGCGCY 3 cut(s) 231, 437, 646
BglII AGATCT 1 cut(s) 613
Bme1390I CCNGG 2 cut(s) 382, 590
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 5 cut(s) 229, 435, 644, 882, 897
BmrFI CCNGG 2 cut(s) 382, 590
BoxI GACNNNNGTC 1 cut(s) 329
BpiI GAAGAC 3 cut(s) 103, 325, 565
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 488
BpuEI CTTGAG 2 cut(s) 194, 710
BpuMI CCSGG 2 cut(s) 382, 590
BsaHI GRCGYC 4 cut(s) 98, 228, 434, 643
BsaI GGTCTC 1 cut(s) 781
BsaJI CCNNGG 1 cut(s) 538
BsaWI WCCGGW 3 cut(s) 390, 603, 929
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 310, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 588, 595
Bse118I RCCGGY 2 cut(s) 621, 660
Bse1I ACTGG 3 cut(s) 329, 890, 955
BseAI TCCGGA 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 2 cut(s) 165, 700
BseLI CCNNNNNNNGG 3 cut(s) 287, 588, 595
BseMII CTCAG 4 cut(s) 411, 479, 608, 932
BseNI ACTGG 3 cut(s) 329, 890, 955
BseRI GAGGAG 6 cut(s) 26, 29, 38, 49, 170, 236
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 4 cut(s) 413, 488, 693, 936
Bsh1236I CGCG 2 cut(s) 239, 439
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 4 cut(s) 122, 147, 255, 291
BshNI GGYRCC 4 cut(s) 227, 433, 642, 895
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 768
BslFI GGGAC 2 cut(s) 199, 638
BslI CCNNNNNNNGG 3 cut(s) 287, 588, 595
BsmAI GTCTC 4 cut(s) 61, 96, 781, 921
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 199, 638
BsnI GGCC 4 cut(s) 122, 147, 255, 291
Bso31I GGTCTC 1 cut(s) 781
Bsp1286I GDGCHC 2 cut(s) 768, 863
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
Bsp19I CCATGG 1 cut(s) 538
Bsp68I TCGCGA 1 cut(s) 239
BspANI GGCC 4 cut(s) 122, 147, 255, 291
BspCNI CTCAG 4 cut(s) 410, 480, 609, 931
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 2 cut(s) 239, 439
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 5 cut(s) 229, 435, 644, 882, 897
BspPI GGATC 2 cut(s) 401, 614
BspT107I GGYRCC 4 cut(s) 227, 433, 642, 895
BspTNI GGTCTC 1 cut(s) 781
BsrFI RCCGGY 2 cut(s) 621, 660
BsrI ACTGG 3 cut(s) 329, 890, 955
BssAI RCCGGY 2 cut(s) 621, 660
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
BssNI GRCGYC 4 cut(s) 98, 228, 434, 643
BssT1I CCWWGG 1 cut(s) 538
Bst4CI ACNGT 6 cut(s) 73, 109, 268, 316, 571, 872
Bst6I CTCTTC 2 cut(s) 29, 677
BstACI GRCGYC 4 cut(s) 98, 228, 434, 643
BstC8I GCNNGC 4 cut(s) 149, 478, 662, 812
BstDEI CTNAG 4 cut(s) 397, 488, 617, 918
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 2 cut(s) 165, 700
BstFNI CGCG 2 cut(s) 239, 439
BstH2I RGCGCY 3 cut(s) 231, 437, 646
BstHHI GCGC 3 cut(s) 230, 436, 645
BstKTI GATC 9 cut(s) 105, 206, 237, 354, 396, 609, 616, 735, 786
BstMAI GTCTC 4 cut(s) 61, 96, 781, 921
BstMBI GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 128, 236, 461
BstPAI GACNNNNGTC 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 380, 588
BstUI CGCG 2 cut(s) 239, 439
BstV1I GCAGC 4 cut(s) 413, 488, 693, 936
BstV2I GAAGAC 3 cut(s) 103, 325, 565
BstX2I RGATCY 2 cut(s) 393, 613
BstYI RGATCY 2 cut(s) 393, 613
BstZI CGGCCG 1 cut(s) 120
BsuRI GGCC 4 cut(s) 122, 147, 255, 291
BtgI CCRYGG 1 cut(s) 538
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 165, 700
BtsIMutI CAGTG 2 cut(s) 838, 897
BtuMI TCGCGA 1 cut(s) 239
Cac8I GCNNGC 4 cut(s) 149, 478, 662, 812
CciI TCATGA 1 cut(s) 910
CfoI GCGC 3 cut(s) 230, 436, 645
Cfr10I RCCGGY 2 cut(s) 621, 660
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 402, 553, 625
CspCI CAANNNNNGTGG 2 cut(s) 873, 908
CviAII CATG 5 cut(s) 539, 562, 595, 787, 911
CviQI GTAC 3 cut(s) 402, 553, 625
DdeI CTNAG 4 cut(s) 397, 488, 617, 918
DinI GGCGCC 3 cut(s) 229, 435, 644
DpnI GATC 9 cut(s) 104, 205, 236, 353, 395, 608, 615, 734, 785
DpnII GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
EaeI YGGCCR 3 cut(s) 120, 145, 253
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 29, 677
EarI CTCTTC 2 cut(s) 29, 677
EciI GGCGGA 2 cut(s) 52, 158
Ecl136II GAGCTC 1 cut(s) 766
EclXI CGGCCG 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 538
Eco24I GRGCYC 2 cut(s) 768, 863
Eco31I GGTCTC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 766
EcoICRI GAGCTC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 768, 863
EgeI GGCGCC 3 cut(s) 229, 435, 644
EheI GGCGCC 3 cut(s) 229, 435, 644
ErhI CCWWGG 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 5 cut(s) 542, 565, 598, 790, 914
FaiI YATR 6 cut(s) 512, 540, 563, 596, 788, 912
FaqI GGGAC 2 cut(s) 199, 638
FatI CATG 5 cut(s) 538, 561, 594, 786, 910
FauI CCCGC 1 cut(s) 289
FbaI TGATCA 3 cut(s) 351, 732, 783
FokI GGATG 2 cut(s) 152, 707
FriOI GRGCYC 2 cut(s) 768, 863
GlaI GCGC 3 cut(s) 229, 435, 644
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 3 cut(s) 231, 437, 646
HaeIII GGCC 4 cut(s) 122, 147, 255, 291
HhaI GCGC 3 cut(s) 230, 436, 645
Hin1I GRCGYC 4 cut(s) 98, 228, 434, 643
Hin1II CATG 5 cut(s) 542, 565, 598, 790, 914
Hin6I GCGC 3 cut(s) 228, 434, 643
HinP1I GCGC 3 cut(s) 228, 434, 643
HincII GTYRAC 2 cut(s) 567, 586
HindII GTYRAC 2 cut(s) 567, 586
HphI GGTGA 9 cut(s) 67, 97, 256, 262, 304, 482, 793, 857, 944
Hpy166II GTNNAC 4 cut(s) 567, 586, 823, 848
Hpy188I TCNGA 5 cut(s) 96, 203, 362, 611, 618
Hpy188III TCNNGA 7 cut(s) 158, 238, 391, 524, 689, 730, 911
Hpy8I GTNNAC 4 cut(s) 567, 586, 823, 848
HpyAV CCTTC 3 cut(s) 142, 202, 909
HpyCH4III ACNGT 6 cut(s) 73, 109, 268, 316, 571, 872
HpyCH4IV ACGT 4 cut(s) 98, 309, 648, 738
HpyCH4V TGCA 2 cut(s) 532, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 236, 461
HpyF3I CTNAG 4 cut(s) 397, 488, 617, 918
HpySE526I ACGT 4 cut(s) 98, 309, 648, 738
Hsp92I GRCGYC 4 cut(s) 98, 228, 434, 643
Hsp92II CATG 5 cut(s) 542, 565, 598, 790, 914
HspAI GCGC 3 cut(s) 228, 434, 643
KasI GGCGCC 3 cut(s) 227, 433, 642
Kpn2I TCCGGA 1 cut(s) 390
KroI GCCGGC 1 cut(s) 660
KroNI GCCGGC 1 cut(s) 662
Ksp22I TGATCA 3 cut(s) 351, 732, 783
Kzo9I GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
LmnI GCTCC 6 cut(s) 121, 583, 672, 763, 880, 932
Lsp1109I GCAGC 4 cut(s) 413, 488, 693, 936
MaeII ACGT 4 cut(s) 98, 309, 648, 738
MaeIII GTNAC 4 cut(s) 73, 268, 310, 316
MalI GATC 9 cut(s) 104, 205, 236, 353, 395, 608, 615, 734, 785
MboI GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
MboII GAAGA 9 cut(s) 3, 16, 19, 103, 325, 349, 367, 565, 694
MflI RGATCY 2 cut(s) 393, 613
MhlI GDGCHC 2 cut(s) 768, 863
MluCI AATT 1 cut(s) 533
Mly113I GGCGCC 3 cut(s) 228, 434, 643
MlyI GAGTC 7 cut(s) 98, 235, 319, 694, 709, 751, 923
MmeI TCCRAC 1 cut(s) 119
MroI TCCGGA 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 660
MseI TTAA 1 cut(s) 957
MspR9I CCNGG 2 cut(s) 382, 590
MvnI CGCG 2 cut(s) 239, 439
MwoI GCNNNNNNNGC 3 cut(s) 128, 236, 461
NaeI GCCGGC 1 cut(s) 662
NarI GGCGCC 3 cut(s) 228, 434, 643
NciI CCSGG 2 cut(s) 382, 590
NcoI CCATGG 1 cut(s) 538
NdeII GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
NgoMIV GCCGGC 1 cut(s) 660
NlaIII CATG 5 cut(s) 542, 565, 598, 790, 914
NlaIV GGNNCC 5 cut(s) 229, 435, 644, 882, 897
NmeAIII GCCGAG 2 cut(s) 112, 399
NmuCI GTSAC 4 cut(s) 73, 268, 310, 316
NruI TCGCGA 1 cut(s) 239
PagI TCATGA 1 cut(s) 910
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 735
PdiI GCCGGC 1 cut(s) 662
PfeI GAWTC 4 cut(s) 363, 406, 415, 828
PflFI GACNNNGTC 1 cut(s) 590
PleI GAGTC 7 cut(s) 97, 235, 319, 693, 708, 750, 922
PluTI GGCGCC 3 cut(s) 231, 437, 646
PpsI GAGTC 7 cut(s) 97, 235, 319, 693, 708, 750, 922
PshAI GACNNNNGTC 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 768
PspN4I GGNNCC 5 cut(s) 229, 435, 644, 882, 897
PspPI GGNCC 1 cut(s) 160
PsuI RGATCY 2 cut(s) 393, 613
PsyI GACNNNGTC 1 cut(s) 590
RruI TCGCGA 1 cut(s) 239
RsaI GTAC 3 cut(s) 403, 554, 626
RsaNI GTAC 3 cut(s) 402, 553, 625
SacI GAGCTC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 957
Sau3AI GATC 9 cut(s) 102, 203, 234, 351, 393, 606, 613, 732, 783
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 7 cut(s) 98, 235, 319, 694, 709, 751, 923
ScrFI CCNGG 2 cut(s) 382, 590
SduI GDGCHC 2 cut(s) 768, 863
SfoI GGCGCC 3 cut(s) 229, 435, 644
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 209, 689
SmoI CTYRAG 2 cut(s) 209, 689
Sse9I AATT 1 cut(s) 533
SspDI GGCGCC 3 cut(s) 227, 433, 642
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 380, 588
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 6 cut(s) 73, 109, 268, 316, 571, 872
TaiI ACGT 4 cut(s) 101, 312, 651, 741
TaqI TCGA 8 cut(s) 101, 249, 336, 366, 494, 745, 874, 947
TaqII GACCGA 1 cut(s) 622
TasI AATT 1 cut(s) 533
TauI GCSGC 6 cut(s) 86, 131, 426, 439, 464, 643
TfiI GAWTC 4 cut(s) 363, 406, 415, 828
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 2 cut(s) 838, 897
TseFI GTSAC 4 cut(s) 73, 268, 310, 316
TseI GCWGC 4 cut(s) 426, 501, 706, 924
Tsp45I GTSAC 4 cut(s) 73, 268, 310, 316
TspGWI ACGGA 3 cut(s) 43, 840, 893
TspRI CASTG 2 cut(s) 838, 897
Tth111I GACNNNGTC 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 160
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.