pycom04g10020

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000614
Physical Location & Seq
Forward (+)
12755619 .. 12756174
556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10020.2

Sequence Viewer

Length: 513 bp
ATGCCCTTGGGCCAGCCCTCTCTCCCACTCATCTTCTACAACATCTCCCCGAGAAGAATCTCCGTGAACAACCTTCAATACTCCCTCACCGTCACTGCCTCCCCAAATTTCCAAGGCTATTTGTCGATCAACGATCTGGGTATTAATCCTAACGCAGTTCATGATGATGGGTCGATGATCGTTTACGCAATCGACGAGCTTTTCAATTTGTCCTTCTTGGCCACCGACGCCGCTCAAGAACCGGTGGCAGATCAACCATTGATGAGCTTTGTTTCGCGTGTTCAACGGCTGAGCCCTGCTCCGAGTACGACTGTGAATTACAACATGGAGGCTGAAACGTACCGGCCCGGTCCAGAATCTTTCGGTTTTGTCGCCAATTTGCTGAGATCCAAAAGGTACTCAATCTTTGCCGCATTTCTTGATGCACAGCTGGTGGGGAAGATGAAGAAAGGAAGCCACGCTGGGTTTCCTTCTTCTTTTTTTTTTTTTTTTCTAATTTTTTATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

171

Amino Acids

18.93

Weight (kDa)

5.27

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 1 cut(s) 277
AciI CCGC 2 cut(s) 231, 411
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 307, 341, 398
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 3 cut(s) 77, 205, 284
AluBI AGCT 3 cut(s) 199, 267, 430
AluI AGCT 3 cut(s) 199, 267, 430
AlwI GGATC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 3 cut(s) 10, 219, 344
ApoI RAATTY 1 cut(s) 106
AseI ATTAAT 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 10, 345, 350
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 221
BanII GRGCYC 1 cut(s) 296
BccI CCATC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 348
BisI GCNGC 2 cut(s) 231, 411
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 2 cut(s) 232, 412
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 10, 345, 350
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 412
BplI GAGNNNNNCTC 2 cut(s) 283, 315
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 6, 112
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse118I RCCGGY 2 cut(s) 241, 342
BseDI CCNNGG 2 cut(s) 6, 112
BseMII CTCAG 2 cut(s) 281, 374
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 3 cut(s) 12, 221, 346
BshTI ACCGGT 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 3 cut(s) 242, 343, 348
BsnI GGCC 3 cut(s) 12, 221, 346
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 5 cut(s) 126, 133, 177, 250, 386
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 2 cut(s) 231, 411
BspANI GGCC 3 cut(s) 12, 221, 346
BspCNI CTCAG 2 cut(s) 282, 375
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 160
BspPI GGATC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 241, 342
BssAI RCCGGY 2 cut(s) 241, 342
BssECI CCNNGG 2 cut(s) 6, 112
BssMI GATC 5 cut(s) 126, 133, 177, 250, 386
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 6, 112
Bst4CI ACNGT 2 cut(s) 91, 313
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 290, 383
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 5 cut(s) 129, 136, 180, 253, 389
BstMBI GATC 5 cut(s) 126, 133, 177, 250, 386
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 3 cut(s) 12, 221, 346
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 14
CciI TCATGA 1 cut(s) 160
Cfr10I RCCGGY 2 cut(s) 241, 342
Cfr13I GGNCC 3 cut(s) 10, 345, 350
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 306, 340, 397
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 2 cut(s) 161, 325
CviQI GTAC 3 cut(s) 306, 340, 397
DdeI CTNAG 2 cut(s) 290, 383
DpnI GATC 5 cut(s) 128, 135, 179, 252, 388
DpnII GATC 5 cut(s) 126, 133, 177, 250, 386
EaeI YGGCCR 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 6, 112
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 6, 112
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 6, 112
FaeI CATG 2 cut(s) 164, 328
FaiI YATR 3 cut(s) 162, 326, 504
FatI CATG 2 cut(s) 160, 324
Fnu4HI GCNGC 2 cut(s) 231, 411
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 231, 411
GluI GCNGC 2 cut(s) 231, 411
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 12, 221, 346
HapII CCGG 3 cut(s) 242, 343, 348
HgaI GACGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 164, 328
HinfI GANTC 2 cut(s) 57, 356
HpaII CCGG 3 cut(s) 242, 343, 348
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 67, 184
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 4 cut(s) 161, 236, 353, 419
Hpy8I GTNNAC 2 cut(s) 67, 184
Hpy99I CGWCG 2 cut(s) 197, 230
HpyAV CCTTC 3 cut(s) 83, 223, 480
HpyCH4III ACNGT 2 cut(s) 91, 313
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 290, 383
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 164, 328
Kzo9I GATC 5 cut(s) 126, 133, 177, 250, 386
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 9 cut(s) 26, 122, 255, 309, 356, 361, 366, 416, 447
LweI GCATC 1 cut(s) 412
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 128, 135, 179, 252, 388
MbiI CCGCTC 1 cut(s) 233
MboI GATC 5 cut(s) 126, 133, 177, 250, 386
MboII GAAGA 5 cut(s) 25, 66, 451, 457, 465
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 5 cut(s) 106, 205, 316, 376, 495
MluNI TGGCCA 1 cut(s) 221
MnlI CCTC 4 cut(s) 28, 95, 109, 322
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 2 cut(s) 144, 511
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 3 cut(s) 242, 343, 348
MspR9I CCNGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 348
NdeII GATC 5 cut(s) 126, 133, 177, 250, 386
NlaIII CATG 2 cut(s) 164, 328
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 57, 356
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 2 cut(s) 232, 412
PshBI ATTAAT 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 461
PspPI GGNCC 3 cut(s) 10, 345, 350
PsuI RGATCY 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 3 cut(s) 307, 341, 398
RsaNI GTAC 3 cut(s) 306, 340, 397
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 144, 511
SatI GCNGC 2 cut(s) 231, 411
Sau3AI GATC 5 cut(s) 126, 133, 177, 250, 386
Sau96I GGNCC 3 cut(s) 10, 345, 350
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 296
SetI ASST 6 cut(s) 75, 201, 269, 341, 398, 432
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 106, 205, 316, 376, 495
SsiI CCGC 2 cut(s) 231, 411
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 6, 112
TaaI ACNGT 2 cut(s) 91, 313
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 125, 173, 192
TasI AATT 5 cut(s) 106, 205, 316, 376, 495
TauI GCSGC 2 cut(s) 233, 413
TfiI GAWTC 2 cut(s) 57, 356
Tru1I TTAA 2 cut(s) 144, 511
Tru9I TTAA 2 cut(s) 144, 511
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 149, 458
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.