Rmu_ssc0000386.1_g000026

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000386.1
OG0000614
Physical Location & Seq
Reverse (-)
118841 .. 121057
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000386.1_g000026.1.cds

Sequence Viewer

Length: 1020 bp
atgaaacaaggccataggggaaatgatcagtggcaaaaaccaaaccttcgacgaagagatggggaccggaggtggccggaatcgccggaaatcgtcaaaatcctcaaactgcagccggagtggttttggcttcgatccgtggttttccggccaaatcttggaaaaccaaggctgctggggtgctcggagggaggaggcgctcctctggtgaccggtggcacgccctgtggtggccggaatcgccggaaatcggagggggaagaaaaatggccgaaccggagaagagagagctcggggggaaggagagagaaaaagctgggctctgtcaatggcgtcaccgtcgatcactgccgtctctctcctcctcctccttctcctcctcatctccctcctctctatctctcttcctctctcccctcctatagcatcctcatcaccgccgaagtcctctccgattcctgctacctctctatggctctcactctcgaggccgtctctcagtccctcatccccaagtcgccgtcgctcaccatcttcgctatgccggactccaacttcaagagagccggccatccctccctctatctcttccaattccacttcgcccctctcgctctccccctccaaaccctaaaatcgctccccgccggcaccaagatcctgactctcctctccggtagctccctttttatcacctcgcctccttccggcaccagaatttctctcaacggcgtcagggtcacaactgccacctcacggctctacgacaacgggttcttgatcattctcggagtcgaggacttcttcgaccagaacttccatactcccgcccagacccgaatttcggtcccggatctgatgtgcgagtcgccttcgtcgaacggtacaagcacgattgggtttcttgcggcttcttggtttgaaggagccagaggcgtgatgaggtccaatggaaacagagtgatggcttcatttcttgatctgcatctcatggggttcaagaccatccgagttcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

339

Amino Acids

37.4

Weight (kDa)

10.14

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 650, 710
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 4 cut(s) 438, 645, 828, 908
AclWI GGATC 3 cut(s) 129, 652, 861
AcoI YGGCCR 5 cut(s) 74, 149, 232, 269, 568
AcsI RAATTY 2 cut(s) 717, 840
AcyI GRCGYC 2 cut(s) 333, 732
AfaI GTAC 1 cut(s) 886
AfiI CCNNNNNNNGG 7 cut(s) 158, 230, 250, 472, 707, 756, 844
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 3 cut(s) 559, 923, 1000
AluBI AGCT 3 cut(s) 291, 316, 681
AluI AGCT 3 cut(s) 291, 316, 681
Alw21I GWGCWC 2 cut(s) 185, 293
Alw26I GTCTC 2 cut(s) 359, 499
AlwI GGATC 3 cut(s) 129, 652, 861
Ama87I CYCGRG 2 cut(s) 292, 485
AoxI GGCC 7 cut(s) 10, 74, 149, 232, 269, 489, 568
ApeKI GCWGC 2 cut(s) 112, 172
ApoI RAATTY 2 cut(s) 717, 840
ArsI GACNNNNNNTTYG 2 cut(s) 826, 858
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 64, 847, 945
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 5 cut(s) 220, 328, 427, 520, 685
AvaI CYCGRG 2 cut(s) 292, 485
AvaII GGWCC 3 cut(s) 64, 847, 945
BanI GGYRCC 2 cut(s) 650, 710
BanII GRGCYC 2 cut(s) 293, 323
Bbv12I GWGCWC 2 cut(s) 185, 293
BbvI GCAGC 2 cut(s) 124, 159
BccI CCATC 5 cut(s) 53, 539, 579, 958, 1013
BceAI ACGGC 5 cut(s) 336, 476, 505, 745, 773
BclI TGATCA 2 cut(s) 25, 780
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 2 cut(s) 359, 499
BfmI CTRYAG 2 cut(s) 110, 421
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 3 cut(s) 113, 173, 909
BlsI GCNGC 3 cut(s) 114, 174, 910
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 3 cut(s) 64, 847, 945
BmeT110I CYCGRG 2 cut(s) 292, 485
BmgT120I GGNCC 3 cut(s) 64, 847, 945
BmiI GGNNCC 5 cut(s) 65, 652, 712, 849, 928
BmrFI CCNGG 1 cut(s) 851
BmsI GCATC 2 cut(s) 435, 994
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 984
BsaHI GRCGYC 2 cut(s) 333, 732
BsaJI CCNNGG 2 cut(s) 138, 167
BsaWI WCCGGW 4 cut(s) 66, 212, 276, 674
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 7 cut(s) 158, 230, 250, 472, 707, 756, 844
Bse118I RCCGGY 3 cut(s) 212, 566, 647
Bse8I GATNNNNATC 1 cut(s) 984
BseDI CCNNGG 2 cut(s) 138, 167
BseGI GGATG 4 cut(s) 426, 507, 571, 1005
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 7 cut(s) 158, 230, 250, 472, 707, 756, 844
BseMII CTCAG 1 cut(s) 512
BseRI GAGGAG 9 cut(s) 192, 207, 351, 354, 357, 366, 369, 381, 659
BseXI GCAGC 2 cut(s) 124, 159
BseYI CCCAGC 2 cut(s) 175, 316
BshFI GGCC 7 cut(s) 12, 76, 151, 234, 271, 491, 570
BshNI GGYRCC 2 cut(s) 650, 710
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 185, 293
BsiHKCI CYCGRG 2 cut(s) 292, 485
BslFI GGGAC 3 cut(s) 77, 487, 833
BslI CCNNNNNNNGG 7 cut(s) 158, 230, 250, 472, 707, 756, 844
BsmAI GTCTC 2 cut(s) 359, 499
BsmBI CGTCTC 2 cut(s) 359, 499
BsmFI GGGAC 3 cut(s) 77, 487, 833
BsnI GGCC 7 cut(s) 12, 76, 151, 234, 271, 491, 570
BsoBI CYCGRG 2 cut(s) 292, 485
Bsp1286I GDGCHC 3 cut(s) 185, 293, 323
Bsp143I GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
BspACI CCGC 4 cut(s) 438, 645, 828, 908
BspANI GGCC 7 cut(s) 12, 76, 151, 234, 271, 491, 570
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 5 cut(s) 65, 652, 712, 849, 928
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 3 cut(s) 129, 652, 861
BspT107I GGYRCC 2 cut(s) 650, 710
BsrFI RCCGGY 3 cut(s) 212, 566, 647
BssAI RCCGGY 3 cut(s) 212, 566, 647
BssECI CCNNGG 2 cut(s) 138, 167
BssMI GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
BssNI GRCGYC 2 cut(s) 333, 732
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 340, 884
Bst6I CTCTTC 4 cut(s) 49, 277, 409, 593
BstACI GRCGYC 2 cut(s) 333, 732
BstC8I GCNNGC 3 cut(s) 221, 568, 649
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 4 cut(s) 426, 507, 571, 1005
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 7 cut(s) 28, 137, 346, 660, 783, 856, 982
BstMAI GTCTC 2 cut(s) 359, 499
BstMBI GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
BstMWI GCNNNNNNNGC 3 cut(s) 82, 240, 611
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 2 cut(s) 110, 421
BstV1I GCAGC 2 cut(s) 124, 159
BstX2I RGATCY 2 cut(s) 657, 853
BstYI RGATCY 2 cut(s) 657, 853
BsuRI GGCC 7 cut(s) 12, 76, 151, 234, 271, 491, 570
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 4 cut(s) 426, 507, 571, 1005
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 35, 346
Cac8I GCNNGC 3 cut(s) 221, 568, 649
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 3 cut(s) 212, 566, 647
Cfr13I GGNCC 3 cut(s) 64, 847, 945
CseI GACGC 2 cut(s) 322, 721
Csp6I GTAC 1 cut(s) 885
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 1 cut(s) 991
CviQI GTAC 1 cut(s) 885
DdeI CTNAG 1 cut(s) 498
DpnI GATC 7 cut(s) 27, 136, 345, 659, 782, 855, 981
DpnII GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
EaeI YGGCCR 5 cut(s) 74, 149, 232, 269, 568
Eam1104I CTCTTC 4 cut(s) 49, 277, 409, 593
EarI CTCTTC 4 cut(s) 49, 277, 409, 593
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 293, 323
Eco47I GGWCC 3 cut(s) 64, 847, 945
Eco53kI GAGCTC 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 292, 485
Eco91I GGTNACC 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 293, 323
ErhI CCWWGG 1 cut(s) 167
Esp3I CGTCTC 2 cut(s) 359, 499
FaeI CATG 1 cut(s) 994
FaiI YATR 6 cut(s) 15, 423, 473, 542, 822, 992
FaqI GGGAC 3 cut(s) 77, 487, 833
FatI CATG 1 cut(s) 990
FauI CCCGC 2 cut(s) 652, 835
FbaI TGATCA 2 cut(s) 25, 780
Fnu4HI GCNGC 3 cut(s) 113, 173, 909
FokI GGATG 4 cut(s) 413, 494, 558, 992
FriOI GRGCYC 2 cut(s) 293, 323
Fsp4HI GCNGC 3 cut(s) 113, 173, 909
GlaI GCGC 1 cut(s) 199
GluI GCNGC 3 cut(s) 113, 173, 909
GsaI CCCAGC 2 cut(s) 179, 320
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 7 cut(s) 12, 76, 151, 234, 271, 491, 570
HgaI GACGC 2 cut(s) 322, 721
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 2 cut(s) 333, 732
Hin1II CATG 1 cut(s) 994
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 7 cut(s) 80, 238, 455, 548, 664, 792, 866
HphI GGTGA 5 cut(s) 220, 328, 427, 520, 685
Hpy188I TCNGA 6 cut(s) 187, 253, 454, 791, 858, 1010
Hpy188III TCNNGA 6 cut(s) 485, 559, 661, 778, 977, 1000
Hpy99I CGWCG 4 cut(s) 54, 344, 526, 880
HpyAV CCTTC 6 cut(s) 56, 294, 381, 714, 882, 917
HpyCH4III ACNGT 2 cut(s) 340, 884
HpyCH4V TGCA 2 cut(s) 112, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 240, 611
HpyF3I CTNAG 1 cut(s) 498
Hsp92I GRCGYC 2 cut(s) 333, 732
Hsp92II CATG 1 cut(s) 994
HspAI GCGC 1 cut(s) 198
KroI GCCGGC 2 cut(s) 566, 647
KroNI GCCGGC 2 cut(s) 568, 649
Ksp22I TGATCA 2 cut(s) 25, 780
Kzo9I GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
LmnI GCTCC 4 cut(s) 205, 645, 686, 926
Lsp1109I GCAGC 2 cut(s) 124, 159
LweI GCATC 2 cut(s) 435, 994
MaeIII GTNAC 3 cut(s) 208, 334, 739
MalI GATC 7 cut(s) 27, 136, 345, 659, 782, 855, 981
MboI GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
MboII GAAGA 7 cut(s) 66, 272, 294, 396, 526, 580, 796
MflI RGATCY 2 cut(s) 657, 853
MhlI GDGCHC 3 cut(s) 185, 293, 323
MluCI AATT 3 cut(s) 593, 717, 840
MlyI GAGTC 4 cut(s) 542, 658, 801, 875
MmeI TCCRAC 1 cut(s) 576
MroNI GCCGGC 2 cut(s) 566, 647
MspR9I CCNGG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 82, 240, 611
NaeI GCCGGC 2 cut(s) 568, 649
NciI CCSGG 1 cut(s) 851
NdeII GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
NgoMIV GCCGGC 2 cut(s) 566, 647
NlaIII CATG 1 cut(s) 994
NlaIV GGNNCC 5 cut(s) 65, 652, 712, 849, 928
NmuCI GTSAC 3 cut(s) 208, 334, 739
PaeR7I CTCGAG 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 875
PdiI GCCGGC 2 cut(s) 568, 649
PfeI GAWTC 3 cut(s) 80, 238, 455
PflMI CCANNNNNTGG 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 849
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 3 cut(s) 114, 174, 910
PleI GAGTC 4 cut(s) 542, 658, 800, 874
PpsI GAGTC 4 cut(s) 542, 658, 800, 874
Psp124BI GAGCTC 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 2 cut(s) 175, 316
PspN4I GGNNCC 5 cut(s) 65, 652, 712, 849, 928
PspPI GGNCC 3 cut(s) 64, 847, 945
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 2 cut(s) 657, 853
RsaI GTAC 1 cut(s) 886
RsaNI GTAC 1 cut(s) 885
SacI GAGCTC 1 cut(s) 293
SatI GCNGC 3 cut(s) 113, 173, 909
Sau3AI GATC 7 cut(s) 25, 134, 343, 657, 780, 853, 979
Sau96I GGNCC 3 cut(s) 64, 847, 945
SchI GAGTC 4 cut(s) 542, 658, 801, 875
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 3 cut(s) 185, 293, 323
SetI ASST 9 cut(s) 48, 74, 293, 318, 468, 683, 698, 755, 947
SfaNI GCATC 2 cut(s) 435, 994
SfcI CTRYAG 2 cut(s) 110, 421
Sfr274I CTCGAG 1 cut(s) 485
SinI GGWCC 3 cut(s) 64, 847, 945
SlaI CTCGAG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 3 cut(s) 593, 717, 840
SsiI CCGC 4 cut(s) 438, 645, 828, 908
SstI GAGCTC 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 340, 884
TaqI TCGA 7 cut(s) 49, 133, 342, 486, 795, 807, 878
TaqII GACCGA 1 cut(s) 835
TasI AATT 3 cut(s) 593, 717, 840
TauI GCSGC 1 cut(s) 911
TfiI GAWTC 3 cut(s) 80, 238, 455
TscAI CASTG 2 cut(s) 35, 353
TseFI GTSAC 3 cut(s) 208, 334, 739
TseI GCWGC 2 cut(s) 112, 172
Tsp45I GTSAC 3 cut(s) 208, 334, 739
TspDTI ATGAA 2 cut(s) 17, 960
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 2 cut(s) 35, 353
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 64, 847, 945
XapI RAATTY 2 cut(s) 717, 840
XhoI CTCGAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.