Rh4CG194900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000614
Physical Location & Seq
Reverse (-)
41661700 .. 41662229
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG194900.1

Sequence Viewer

Length: 474 bp
ATGGGGTCGATGATGATATACACCATCGATCGGTTCTTTAACTTGTCTTTCTTGGAGGCTGATGAAGCTTCTGCGTCGGCTCCAATTGCTGGAGTTTCGGGTCAGCCACACCCACCTTTCGGGTCGGTTGCAGATCTGCTTGGGTCTGAAGGTTGTTCGATCATGGATGTGTTTCTTGATGCCCAAATGATTGGGTTCAACCAGAATACGACGTTGATGGTTTTCATTGCCGACAAAGATTACTCAAGGAACAGCTCCGATTACTCGATGATTTTCAGGGAGCACGTGGTCCAGAAGCTACTGCCGACTTTTGAAGAAGTGCCCAATCAGGATCAGGACCTGTACCAAAGCTTCTTTCTGGTTGTTGATGGCCTCAATCGCTTGCTGACGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAGTTGGTCAAGAAGATGGTGGCGCTGATTTCACTGATGGGTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

157

Amino Acids

17.41

Weight (kDa)

4.08

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 89
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 168
AcvI CACGTG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 30, 89, 119
AgsI TTSAA 2 cut(s) 199, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 4 cut(s) 68, 255, 298, 351
AluI AGCT 4 cut(s) 68, 255, 298, 351
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 340
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 397
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 289, 337
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 2 cut(s) 289, 337
BaeGI GKGCMC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 409
BccI CCATC 5 cut(s) 32, 211, 362, 434, 455
BfoI RGCGCY 1 cut(s) 450
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
Bme18I GGWCC 2 cut(s) 289, 337
BmgT120I GGNCC 2 cut(s) 289, 337
BmiI GGNNCC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 89, 119
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 30, 89, 119
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 1 cut(s) 409
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 372
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 30, 89, 119
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 285, 324
Bsp143I GATC 4 cut(s) 28, 133, 159, 331
BspANI GGCC 1 cut(s) 372
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 425
BssMI GATC 4 cut(s) 28, 133, 159, 331
BssNI GRCGYC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 4 cut(s) 31, 136, 162, 334
BstMBI GATC 4 cut(s) 28, 133, 159, 331
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 65, 86, 378
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 340
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 289, 337
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 163
CviJI RGCY 8 cut(s) 59, 68, 80, 106, 255, 298, 351, 372
CviKI_1 RGCY 8 cut(s) 59, 68, 80, 106, 255, 298, 351, 372
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 468
DpnI GATC 4 cut(s) 30, 135, 161, 333
DpnII GATC 4 cut(s) 28, 133, 159, 331
Eco47I GGWCC 2 cut(s) 289, 337
Eco57I CTGAAG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 337
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 19, 164
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 398
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 398
GlaI GCGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 1 cut(s) 372
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 2 cut(s) 66, 349
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 148, 259
Hpy188III TCNNGA 5 cut(s) 176, 292, 329, 335, 434
Hpy99I CGWCG 2 cut(s) 79, 214
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 3 cut(s) 212, 285, 389
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 86, 378
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 3 cut(s) 212, 285, 389
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 447
Kzo9I GATC 4 cut(s) 28, 133, 159, 331
LmnI GCTCC 3 cut(s) 85, 260, 280
LpnPI CCDG 9 cut(s) 75, 215, 262, 305, 314, 320, 344, 353, 438
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 169
MaeII ACGT 3 cut(s) 212, 285, 389
MaeIII GTNAC 1 cut(s) 390
MalI GATC 4 cut(s) 30, 135, 161, 333
MboI GATC 4 cut(s) 28, 133, 159, 331
MboII GAAGA 2 cut(s) 326, 449
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 285, 324
MluCI AATT 1 cut(s) 84
MnlI CCTC 3 cut(s) 49, 383, 402
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 167
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 65, 86, 378
NdeII GATC 4 cut(s) 28, 133, 159, 331
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 390
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 399
Ple19I CGATCG 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
PspCI CACGTG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 289, 337
PspPPI RGGWCCY 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 31
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 4 cut(s) 28, 133, 159, 331
Sau96I GGNCC 2 cut(s) 289, 337
SduI GDGCHC 2 cut(s) 285, 324
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 2 cut(s) 289, 337
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 84
TaiI ACGT 3 cut(s) 215, 288, 392
TaqI TCGA 4 cut(s) 8, 27, 158, 266
TasI AATT 1 cut(s) 84
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 78, 214
TspRI CASTG 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 289, 337
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.