Rh1BG153500

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
25214008 .. 25214369
362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG153500.1

Sequence Viewer

Length: 306 bp
ATGGATGTGTTTCTTGATGCCCAAATGATTGGGTTCAACCAGAATACGACGCTGATGGTTTTCACTGCCGACAAAGACTACTCAAGGAACAGCTCCGATTACTCGATGATTTTCTGGGAGCACGTGGTCCAGAAGCTGCAGCCGACTTTTGAAGAAGTGCCCGATCAGGACCTGTACCAAAGCTTCTTTCTGGTTGTTGATAGCCTCAATCGCTTGCTGACGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAGTTGATCAAGAAGATGGTGGCGCTGATTTCACTGATGGGTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

4.05

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
AcvI CACGTG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 37, 152
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 3 cut(s) 93, 136, 183
AluI AGCT 3 cut(s) 93, 136, 183
Alw21I GWGCWC 1 cut(s) 123
AlwNI CAGNNNCTG 2 cut(s) 136, 172
ApeKI GCWGC 3 cut(s) 136, 139, 229
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 127, 169
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 127, 169
BaeGI GKGCMC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbrPI CACGTG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 123, 151, 241
BccI CCATC 3 cut(s) 49, 266, 287
BclI TGATCA 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 3 cut(s) 137, 140, 230
BlsI GCNGC 3 cut(s) 138, 141, 231
Bme18I GGWCC 2 cut(s) 127, 169
BmgT120I GGNCC 2 cut(s) 127, 169
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 3 cut(s) 123, 151, 241
BsiHKAI GWGCWC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 123, 162
Bsp143I GATC 2 cut(s) 163, 262
BspMAI CTGCAG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 257
BssMI GATC 2 cut(s) 163, 262
BssNI GRCGYC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 166, 265
BstMBI GATC 2 cut(s) 163, 262
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 123, 151, 241
BstXI CCANNNNNNTGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 288
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 2 cut(s) 136, 172
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 127, 169
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 5 cut(s) 93, 136, 142, 183, 204
CviKI_1 RGCY 5 cut(s) 93, 136, 142, 183, 204
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 165, 264
DpnII GATC 2 cut(s) 163, 262
Eco47I GGWCC 2 cut(s) 127, 169
Eco72I CACGTG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 169
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 137, 140, 230
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 137, 140, 230
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 137, 140, 230
HaeII RGCGCY 1 cut(s) 282
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 221
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 181
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 14, 130, 167, 266
Hpy99I CGWCG 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 123, 221
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 123, 221
Hsp92I GRCGYC 1 cut(s) 221
HspAI GCGC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 163, 262
LmnI GCTCC 2 cut(s) 98, 118
LpnPI CCDG 7 cut(s) 53, 100, 143, 152, 176, 185, 270
Lsp1109I GCAGC 3 cut(s) 123, 151, 241
LweI GCATC 1 cut(s) 7
MaeII ACGT 2 cut(s) 123, 221
MaeIII GTNAC 1 cut(s) 222
MalI GATC 2 cut(s) 165, 264
MboI GATC 2 cut(s) 163, 262
MboII GAAGA 2 cut(s) 164, 281
MhlI GDGCHC 2 cut(s) 123, 162
MnlI CCTC 2 cut(s) 215, 234
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 2 cut(s) 163, 262
NmuCI GTSAC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 138, 141, 231
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspCI CACGTG 1 cut(s) 124
PspPI GGNCC 2 cut(s) 127, 169
PspPPI RGGWCCY 1 cut(s) 169
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 2 cut(s) 136, 172
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 3 cut(s) 137, 140, 230
Sau3AI GATC 2 cut(s) 163, 262
Sau96I GGNCC 2 cut(s) 127, 169
SduI GDGCHC 2 cut(s) 123, 162
SetI ASST 6 cut(s) 95, 126, 138, 174, 185, 224
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 137
SinI GGWCC 2 cut(s) 127, 169
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
TaiI ACGT 2 cut(s) 126, 224
TaqI TCGA 1 cut(s) 104
TscAI CASTG 2 cut(s) 70, 295
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 3 cut(s) 136, 139, 229
Tsp45I GTSAC 1 cut(s) 222
TspRI CASTG 2 cut(s) 70, 295
VpaK11BI GGWCC 2 cut(s) 127, 169
ZraI GACGTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.