MD16G1030000.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000614
Physical Location & Seq
Forward (+)
2155399 .. 2155734
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1030000.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGAGCTCAGAGACGGTTCCGCCGCGCTGAGATCCAAGGGGTGCTCTGTCATGGCGTCGTTTCTTGAGCTGCAATTTCATGGTTCTTTCTTCAAGTTCCAGACGATGCTGACTGCCTTTGCTCCGCTTGACCAAGTTCTTATGAACCGGGTCGGAAACTTGAGCGAGTACTCCTCCATCTTCCATCGTCACGTGGTGACCTGCCGGCTTTTGTGGACCGATTTGGTGAGCTTGAATGATGGGACGGTTCTGAGGACTAATCTCGTGGGGTTTTCGATCAATATCACCGATGACATCTTGAAGCTCAACGACGTGTCGGTTATCTCGTGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

5.83

Isoelectric Point (pI)

25.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 21, 24, 125
AclWI GGATC 1 cut(s) 27
AcvI CACGTG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 94, 235, 301
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 4 cut(s) 7, 70, 231, 304
AluI AGCT 4 cut(s) 7, 70, 231, 304
Alw21I GWGCWC 2 cut(s) 9, 47
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 208, 238, 277
AvaII GGWCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 2 cut(s) 263, 325
BbrPI CACGTG 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 9, 47
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 185, 192, 233
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 24, 71
BlsI GCNGC 2 cut(s) 25, 72
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 2 cut(s) 86, 181
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 281
BseMII CTCAG 3 cut(s) 20, 22, 242
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 9, 47
BsiSI CCGG 2 cut(s) 148, 205
BslFI GGGAC 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 6
BsmBI CGTCTC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 9, 47
Bsp143I GATC 2 cut(s) 32, 276
BspACI CCGC 3 cut(s) 21, 24, 125
BspCNI CTCAG 3 cut(s) 21, 21, 243
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 32, 276
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 2 cut(s) 263, 325
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 2 cut(s) 263, 325
Bst4CI ACNGT 2 cut(s) 17, 247
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 8, 29, 251
BstEII GGTNACC 1 cut(s) 196
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 35, 279
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 2 cut(s) 32, 276
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BtrI CACGTC 1 cut(s) 313
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 52, 80
CviJI RGCY 5 cut(s) 7, 70, 208, 231, 304
CviKI_1 RGCY 5 cut(s) 7, 70, 208, 231, 304
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 8, 29, 251
DpnI GATC 2 cut(s) 34, 278
DpnII GATC 2 cut(s) 32, 276
DraIII CACNNNGTG 1 cut(s) 196
EciI GGCGGA 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 193
Eco91I GGTNACC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 2 cut(s) 55, 83
FaiI YATR 3 cut(s) 53, 81, 143
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 51, 79
Fnu4HI GCNGC 2 cut(s) 24, 71
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 24, 71
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 24, 71
HapII CCGG 2 cut(s) 148, 205
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 2 cut(s) 55, 83
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 2 cut(s) 148, 205
HphI GGTGA 3 cut(s) 208, 238, 277
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 3 cut(s) 11, 155, 252
Hpy188III TCNNGA 3 cut(s) 65, 100, 298
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 2 cut(s) 61, 314
HpyCH4III ACNGT 2 cut(s) 17, 247
HpyCH4IV ACGT 2 cut(s) 192, 312
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 3 cut(s) 8, 29, 251
HpySE526I ACGT 2 cut(s) 192, 312
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 55, 83
HspAI GCGC 1 cut(s) 26
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 32, 276
LmnI GCTCC 2 cut(s) 4, 127
LpnPI CCDG 4 cut(s) 113, 161, 214, 218
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 96
MaeII ACGT 2 cut(s) 192, 312
MaeIII GTNAC 2 cut(s) 188, 196
MalI GATC 2 cut(s) 34, 278
MboI GATC 2 cut(s) 32, 276
MboII GAAGA 2 cut(s) 82, 172
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 9, 47
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 184, 246
MroNI GCCGGC 1 cut(s) 204
MspI CCGG 2 cut(s) 148, 205
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 26
NaeI GCCGGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 149
NdeII GATC 2 cut(s) 32, 276
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 2 cut(s) 55, 83
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 188, 196
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PdiI GCCGGC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 25, 72
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 9
PspCI CACGTG 1 cut(s) 193
PspEI GGTNACC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 2 cut(s) 24, 71
Sau3AI GATC 2 cut(s) 32, 276
Sau96I GGNCC 1 cut(s) 216
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 9, 47
SetI ASST 7 cut(s) 9, 72, 195, 203, 233, 306, 315
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 65, 160
SmoI CTYRAG 2 cut(s) 65, 160
Sse9I AATT 1 cut(s) 74
SsiI CCGC 3 cut(s) 21, 24, 125
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 17, 247
TaiI ACGT 2 cut(s) 195, 315
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 26
TseFI GTSAC 2 cut(s) 188, 196
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 2 cut(s) 188, 196
TspDTI ATGAA 2 cut(s) 68, 158
VpaK11BI GGWCC 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.