RLG00000032925

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000614
Physical Location & Seq
Forward (+)
20944051 .. 20945530
1480 bp
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UTR
Exon/CDS
Intron
RLM00000032925

Sequence Viewer

Length: 351 bp
ATGAGATGCAGAAAAGAGTGGAAAGAGAAGAAAAGAGGGGACCTTGGGGACGGCGTTGCCGAGTTCTTTGGCGTGGGCGCCTCCCTCCCGTTCGGCTCCAAGATCGCTACCATGCTCGACGGTCACTCTCTCACTGTCACCACTCTTCTGACTGACCGCCTCGTCTCGCTCAACAACTCGGTGGCCCCAATTTTCCACGATGGGTCGTTGATCAACTCGGCACTAGCAGGTTCTTCGACCGGTTCGGATTTGATTGGGAGCTTCAGCCCAAAGAATCTCGGCTACTTTGCGCCGCGAAACCCTAACAAAGTGATGGCGGTCAAGATCATTTGGCGAAACCTAGCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

117

Amino Acids

12.51

Weight (kDa)

9.91

Isoelectric Point (pI)

19.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 1 cut(s) 295
AciI CCGC 3 cut(s) 157, 293, 317
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 78
AgeI ACCGGT 1 cut(s) 239
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 1 cut(s) 183
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 2 cut(s) 80, 292
AspS9I GGNCC 2 cut(s) 40, 184
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 77
BccI CCATC 2 cut(s) 194, 307
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 224, 341
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 184
BmiI GGNNCC 4 cut(s) 41, 79, 97, 186
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 53, 62
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 2 cut(s) 53, 62
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 102, 210, 324
BspACI CCGC 3 cut(s) 157, 293, 317
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 4 cut(s) 41, 79, 97, 186
BspMI ACCTGC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 102, 210, 324
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 122, 136
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 78
BstFNI CGCG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 292
BstKTI GATC 3 cut(s) 105, 213, 327
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 3 cut(s) 102, 210, 324
BstMCI CGRYCG 1 cut(s) 240
BstUI CGCG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 218
CfoI GCGC 2 cut(s) 80, 292
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 40, 184
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 1 cut(s) 112
CviJI RGCY 5 cut(s) 96, 185, 261, 267, 282
CviKI_1 RGCY 5 cut(s) 96, 185, 261, 267, 282
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 104, 212, 326
DpnII GATC 3 cut(s) 102, 210, 324
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 43
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 2 cut(s) 53, 62
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 2 cut(s) 224, 341
GlaI GCGC 2 cut(s) 79, 291
GluI GCNGC 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 80, 292
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 2 cut(s) 78, 290
HinP1I GCGC 2 cut(s) 78, 290
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 150, 247
Hpy188III TCNNGA 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 122, 136
HpyCH4V TGCA 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 2 cut(s) 78, 290
KasI GGCGCC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 3 cut(s) 102, 210, 324
LmnI GCTCC 2 cut(s) 101, 258
LpnPI CCDG 2 cut(s) 213, 253
MaeI CTAG 2 cut(s) 224, 341
MaeIII GTNAC 2 cut(s) 122, 136
MalI GATC 3 cut(s) 104, 212, 326
MboI GATC 3 cut(s) 102, 210, 324
MboII GAAGA 3 cut(s) 40, 137, 225
MluCI AATT 1 cut(s) 189
Mly113I GGCGCC 1 cut(s) 78
MnlI CCTC 4 cut(s) 29, 91, 95, 170
MspI CCGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 295
NarI GGCGCC 1 cut(s) 78
NdeII GATC 3 cut(s) 102, 210, 324
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 4 cut(s) 41, 79, 97, 186
NmeAIII GCCGAG 3 cut(s) 85, 197, 258
NmuCI GTSAC 2 cut(s) 122, 136
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 1 cut(s) 294
PluTI GGCGCC 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 4 cut(s) 41, 79, 97, 186
PspPI GGNCC 2 cut(s) 40, 184
PspPPI RGGWCCY 1 cut(s) 40
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 3 cut(s) 102, 210, 324
Sau96I GGNCC 2 cut(s) 40, 184
SetI ASST 4 cut(s) 45, 232, 263, 342
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 40
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 157, 293, 317
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 2 cut(s) 224, 341
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 122, 136
TaqI TCGA 2 cut(s) 117, 236
TasI AATT 1 cut(s) 189
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 1 cut(s) 274
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 122, 136
Tsp45I GTSAC 2 cut(s) 122, 136
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 40
XspI CTAG 2 cut(s) 224, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.