Rorug04G0329900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000614
Physical Location & Seq
Reverse (-)
50457948 .. 50459545
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0329900.1

Sequence Viewer

Length: 969 bp
ATGGATTCCCGGGCTTCGCTTGCGTCCCTGGAATCAACAACCCAAATCAAAATGAGGAGTAGGAAACGCCCATTGCACACTTGTGCGGTTTCCGTTTTAGTGATAGCTGACAAAGCCTGCACCAAAGTCCAAGGTATACATGGCCCTTTAGGCGTAATGGCAAAGGTGGCAGCAAAATTTGCAACATTTGCCAGCCCCATTATTATCTTCATGCAATATCAGTGGATCATAATGGCAGTCCTATCATTTATTGATGGTCGAATACTAGCTGTTGAAAACATGATAGAGAGATTTTACCCTCCATCAAGCATCGTGTTTAACAAGATTGATGACTTTGTCCAAGTCGCAGAAACCCTCCCCGAAAAATTAGATGAAGCAATGAATAAACTCCCCTCTTCTATCCATTCTATTCACCAAGGTTCGGTTTTAGATTGGGGATTGGTTCGTGCCATCACGATGCTAAATTTTGTTAGTGGTACACTAACTTGCTGGAGAATGTCAAAGGGTGCGAGGGAGAAGGAGATTGTAGTTGATACCAGCTGCAATGATAATAATAATCATCATCACAATACTAATGAAGAAGCTGCAGCTAAAGCTAATGGAGCTGCAGAGCAGCTTATAGATTCCTCAAAGCATGATGCTAATAATAAAATGAAGAGTAATCCTAGTACTCCACCTCTTGGTGCTGTTATGAAGGGTAGTTACAAGGAAGCCCTAACCAAGGGTAAAAAAGAAGGGACTGAAAGTAAAAAAGAAGGAAACAAGTATAAAACGAACGGCATACACAGTAAAACAGAAGAGAAGTACTACAACAAGGAAGAAGTGAAGTCTGCTGCTGCTGATGTTAAGAATGGAGGCAATGGTCAGGGTGATATCCTAGACTTGTTTGACACGGCATGGCTAATGAACCGGAGGAGAAGTTTCGAAGGAAAAGCGCCACGGTCGCTATCATTTCACGGGGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

322

Amino Acids

35.51

Weight (kDa)

9.16

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 680
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 176, 463
AfaI GTAC 3 cut(s) 478, 670, 806
AfiI CCNNNNNNNGG 3 cut(s) 421, 680, 721
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 27
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 8 cut(s) 107, 269, 540, 584, 590, 596, 605, 616
AluI AGCT 8 cut(s) 107, 269, 540, 584, 590, 596, 605, 616
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 8 cut(s) 170, 540, 584, 587, 605, 613, 833, 836
ApoI RAATTY 2 cut(s) 176, 463
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 10, 11
AsuHPI GGTGA 2 cut(s) 404, 881
AsuII TTCGAA 1 cut(s) 924
AvaI CYCGRG 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BbvI GCAGC 8 cut(s) 182, 527, 571, 592, 599, 625, 820, 823
BccI CCATC 3 cut(s) 248, 310, 458
BceAI ACGGC 2 cut(s) 793, 909
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 2 cut(s) 10, 11
BfaI CTAG 3 cut(s) 266, 666, 878
BfmI CTRYAG 2 cut(s) 585, 606
BfoI RGCGCY 1 cut(s) 938
BglI GCCNNNNNGGC 1 cut(s) 150
BisI GCNGC 8 cut(s) 171, 541, 585, 588, 606, 614, 834, 837
BlsI GCNGC 8 cut(s) 172, 542, 586, 589, 607, 615, 835, 838
BmcAI AGTACT 2 cut(s) 670, 806
Bme1390I CCNGG 3 cut(s) 10, 11, 29
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 3 cut(s) 10, 11, 29
BmsI GCATC 3 cut(s) 318, 447, 628
BpmI CTGGAG 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 924
BpuMI CCSGG 2 cut(s) 10, 11
BsaJI CCNNGG 6 cut(s) 9, 27, 130, 415, 720, 938
BsaWI WCCGGW 1 cut(s) 909
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 421, 680, 721
Bse3DI GCAATG 4 cut(s) 71, 384, 550, 865
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 6 cut(s) 9, 27, 130, 415, 720, 938
BseLI CCNNNNNNNGG 3 cut(s) 421, 680, 721
BseMI GCAATG 4 cut(s) 71, 384, 550, 865
BseRI GAGGAG 2 cut(s) 70, 928
BseXI GCAGC 8 cut(s) 182, 527, 571, 592, 599, 625, 820, 823
BsgI GTGCAG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 944
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 10, 910
BslFI GGGAC 2 cut(s) 10, 751
BslI CCNNNNNNNGG 3 cut(s) 421, 680, 721
BsmFI GGGAC 2 cut(s) 10, 751
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 924
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 144
BspMAI CTGCAG 2 cut(s) 589, 610
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 924
BsrDI GCAATG 4 cut(s) 71, 384, 550, 865
BssECI CCNNGG 6 cut(s) 9, 27, 130, 415, 720, 938
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 3 cut(s) 130, 415, 720
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 788, 942
Bst6I CTCTTC 3 cut(s) 400, 650, 792
BstAPI GCANNNNNTGC 2 cut(s) 179, 188
BstBI TTCGAA 1 cut(s) 924
BstC8I GCNNGC 3 cut(s) 21, 118, 193
BstDSI CCRYGG 1 cut(s) 938
BstENI CCTNNNNNAGG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMCI CGRYCG 1 cut(s) 944
BstMWI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 593, 602, 943
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 3 cut(s) 8, 9, 27
BstSFI CTRYAG 2 cut(s) 585, 606
BstV1I GCAGC 8 cut(s) 182, 527, 571, 592, 599, 625, 820, 823
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 938
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 21, 118, 193
CfoI GCGC 1 cut(s) 937
Cfr13I GGNCC 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 1 cut(s) 12
Csp6I GTAC 3 cut(s) 477, 669, 805
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviAII CATG 5 cut(s) 140, 211, 280, 635, 897
CviQI GTAC 3 cut(s) 477, 669, 805
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 3 cut(s) 400, 650, 792
EarI CTCTTC 3 cut(s) 400, 650, 792
Eco130I CCWWGG 3 cut(s) 130, 415, 720
Eco32I GATATC 1 cut(s) 874
Eco88I CYCGRG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 3 cut(s) 130, 415, 720
ErhI CCWWGG 3 cut(s) 130, 415, 720
FaeI CATG 5 cut(s) 143, 214, 283, 638, 900
FaqI GGGAC 2 cut(s) 10, 751
FatI CATG 5 cut(s) 139, 210, 279, 634, 896
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 8 cut(s) 171, 541, 585, 588, 606, 614, 834, 837
Fsp4HI GCNGC 8 cut(s) 171, 541, 585, 588, 606, 614, 834, 837
FspBI CTAG 3 cut(s) 266, 666, 878
GlaI GCGC 1 cut(s) 936
GluI GCNGC 8 cut(s) 171, 541, 585, 588, 606, 614, 834, 837
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 10, 910
HgaI GACGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 937
Hin1II CATG 5 cut(s) 143, 214, 283, 638, 900
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HinfI GANTC 3 cut(s) 5, 32, 623
HpaII CCGG 2 cut(s) 10, 910
HphI GGTGA 2 cut(s) 404, 881
Hpy166II GTNNAC 2 cut(s) 137, 479
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 137, 479
HpyAV CCTTC 5 cut(s) 511, 688, 728, 749, 920
HpyCH4III ACNGT 2 cut(s) 788, 942
HpyCH4V TGCA 7 cut(s) 76, 120, 182, 214, 543, 587, 608
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 593, 602, 943
Hsp92II CATG 5 cut(s) 143, 214, 283, 638, 900
HspAI GCGC 1 cut(s) 935
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 602
LpnPI CCDG 9 cut(s) 14, 23, 41, 130, 205, 475, 550, 851, 923
Lsp1109I GCAGC 8 cut(s) 182, 527, 571, 592, 599, 625, 820, 823
LweI GCATC 3 cut(s) 318, 447, 628
MaeI CTAG 3 cut(s) 266, 666, 878
MaeIII GTNAC 1 cut(s) 701
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 199, 387, 590, 667, 809, 830
MluCI AATT 3 cut(s) 176, 365, 463
MnlI CCTC 9 cut(s) 48, 309, 365, 403, 504, 637, 687, 848, 906
MseI TTAA 3 cut(s) 318, 846, 967
MslI CAYNNNNRTG 2 cut(s) 81, 455
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 2 cut(s) 10, 910
MspR9I CCNGG 3 cut(s) 10, 11, 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 593, 602, 943
NciI CCSGG 2 cut(s) 10, 11
NdeII GATC 1 cut(s) 225
NlaIII CATG 5 cut(s) 143, 214, 283, 638, 900
NspV TTCGAA 1 cut(s) 924
OliI CACNNNNGTG 1 cut(s) 81
PfeI GAWTC 3 cut(s) 5, 32, 623
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 8 cut(s) 172, 542, 586, 589, 607, 615, 835, 838
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 2 cut(s) 589, 610
PsyI GACNNNGTC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 540
RsaI GTAC 3 cut(s) 478, 670, 806
RsaNI GTAC 3 cut(s) 477, 669, 805
RseI CAYNNNNRTG 2 cut(s) 81, 455
SaqAI TTAA 3 cut(s) 318, 846, 967
SatI GCNGC 8 cut(s) 171, 541, 585, 588, 606, 614, 834, 837
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 2 cut(s) 670, 806
ScrFI CCNGG 3 cut(s) 10, 11, 29
SfaNI GCATC 3 cut(s) 318, 447, 628
SfcI CTRYAG 2 cut(s) 585, 606
SfuI TTCGAA 1 cut(s) 924
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 81, 455
Sse9I AATT 3 cut(s) 176, 365, 463
SsiI CCGC 1 cut(s) 86
SspMI CTAG 3 cut(s) 266, 666, 878
StyD4I CCNGG 3 cut(s) 8, 9, 27
StyI CCWWGG 3 cut(s) 130, 415, 720
TaaI ACNGT 2 cut(s) 788, 942
TaqI TCGA 2 cut(s) 259, 924
TasI AATT 3 cut(s) 176, 365, 463
TatI WGTACW 2 cut(s) 668, 804
TfiI GAWTC 3 cut(s) 5, 32, 623
Tru1I TTAA 3 cut(s) 318, 846, 967
Tru9I TTAA 3 cut(s) 318, 846, 967
TscAI CASTG 1 cut(s) 227
TseI GCWGC 8 cut(s) 170, 540, 584, 587, 605, 613, 833, 836
TspDTI ATGAA 7 cut(s) 199, 387, 395, 591, 668, 707, 920
TspGWI ACGGA 1 cut(s) 82
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 2 cut(s) 176, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 3 cut(s) 266, 666, 878
ZrmI AGTACT 2 cut(s) 670, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.