Rh7CG108400

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000614
Physical Location & Seq
Forward (+)
8357239 .. 8357538
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG108400.1

Sequence Viewer

Length: 300 bp
ATGTTCGGGTCGACCCGAGTTTCTTTTTGGACAATGGGGTCGATGATGATATACACCATCGATCGGTTCTTTAACTTGTCTTTCTTGGAGGCTGATGAAGCTTCGGCGCCGACTCCGATTGCTGGAGTTTCGGGTCAGCCACATCGGCCTTTCGGGTCGGTTGCAGATCTGCTTAGGTCTGAAGGTTGTTCGATCATGGATGCGTTTCTTGATGCCCAAATGATTGGGTTTAACCAGAATACGACGCTGATGGTTTTCATTGCGGTCAAAGACTACTCAAGGAACAGCTCCGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

99

Amino Acids

10.98

Weight (kDa)

4.56

Isoelectric Point (pI)

24.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 63, 122
AluBI AGCT 2 cut(s) 101, 288
AluI AGCT 2 cut(s) 101, 288
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 15
BanI GGYRCC 1 cut(s) 106
BccI CCATC 2 cut(s) 65, 244
BfaI CTAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 145
BglII AGATCT 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 190, 202
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 262
Bsa29I ATCGAT 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 122
Bse3DI GCAATG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 60
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 63, 122
BseMI GCAATG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 63, 122
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 15
Bsp143I GATC 3 cut(s) 61, 166, 192
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 258
BssMI GATC 3 cut(s) 61, 166, 192
BssNI GRCGYC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 64, 169, 195
BstMBI GATC 3 cut(s) 61, 166, 192
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 98, 145
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 205
CfoI GCGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 253
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 92, 101, 139, 148, 288
CviKI_1 RGCY 5 cut(s) 92, 101, 139, 148, 288
DdeI CTNAG 1 cut(s) 173
DinI GGCGCC 1 cut(s) 108
DpnI GATC 3 cut(s) 63, 168, 194
DpnII GATC 3 cut(s) 61, 166, 192
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 15
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 52, 197
FatI CATG 1 cut(s) 195
FblI GTMKAC 1 cut(s) 11
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 298
GlaI GCGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 117, 181, 292
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 145
HpyF3I CTNAG 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 107
KasI GGCGCC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 61, 166, 192
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 2 cut(s) 108, 248
LweI GCATC 2 cut(s) 190, 202
MaeI CTAG 1 cut(s) 298
MalI GATC 3 cut(s) 63, 168, 194
MboI GATC 3 cut(s) 61, 166, 192
MflI RGATCY 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 82
MseI TTAA 2 cut(s) 72, 231
MwoI GCNNNNNNNGC 2 cut(s) 98, 145
NarI GGCGCC 1 cut(s) 107
NdeII GATC 3 cut(s) 61, 166, 192
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 108
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 1 cut(s) 106
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 166
PvuI CGATCG 1 cut(s) 64
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 72, 231
Sau3AI GATC 3 cut(s) 61, 166, 192
SchI GAGTC 1 cut(s) 106
SetI ASST 4 cut(s) 103, 179, 187, 290
SfaNI GCATC 2 cut(s) 190, 202
SfoI GGCGCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SsiI CCGC 1 cut(s) 263
SspDI GGCGCC 1 cut(s) 106
SspMI CTAG 1 cut(s) 298
TaqI TCGA 4 cut(s) 11, 41, 60, 191
Tru1I TTAA 2 cut(s) 72, 231
Tru9I TTAA 2 cut(s) 72, 231
TspDTI ATGAA 2 cut(s) 111, 247
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.