RLG00000019874

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000614
Physical Location & Seq
Reverse (-)
57850936 .. 57852321
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019874

Sequence Viewer

Length: 612 bp
ATGACTCTCGAGGCCATCTCTCAGTCCCTCGTCCCCAAGTCGCCGTCACTCACCATCTTCGCTCCGCCGGACTCTGCCTTCAAGAGAGCCGGCCAGCCCTCCCTCTCTCTCGGAGTCGAGGACTTTTTCGACCTGAACTTCCATGCTCCCGCCCGGACCCAAATTCCGGTCCCGGATCCGATGTGCGAGTCTCCTTCATCGAACGGTACAAGCACGATTGGGTTTCTGGCGGCTTCTTGGTTTGAAGGAGCCAGAGGCGTGATGAGGTCCAATGGATACAGAGTGATGGCTTCATTTCTTGATCAGCAGCTCATGGGGTTCAAGAACCCTCCGAGTGAGAGGCTTACGACGGGCCATTACTTGACCATGATTACAGGAGGTGGGAGGATGGCAGACCAGCAGCCGGAATCTGAGCTTGGCTTTGGTGTTTGCTCCCCCATAACTTTGAGCATAGGGGGTTGTGTCGGGCTGAGAAAAAACTTACCTATGTTTCTGATTGGGAACCACCTCAAGACTGGTAGGGTTGGCGGCTCATTGAATCAAGCTGCCGGAATTGGGTTCGGGTTTCGCCGACGAGGGATGGAGGAACATGGGAGGTCAGGGCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

204

Amino Acids

21.68

Weight (kDa)

8.96

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 65, 150, 230, 528
AclWI GGATC 2 cut(s) 170, 183
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 166, 403, 555
AgsI TTSAA 4 cut(s) 82, 245, 322, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 3 cut(s) 310, 415, 545
AluI AGCT 3 cut(s) 310, 415, 545
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 2 cut(s) 170, 183
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 3 cut(s) 12, 91, 352
ApeKI GCWGC 3 cut(s) 307, 400, 545
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 156, 169, 267, 352
AsuC2I CCSGG 2 cut(s) 154, 173
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 3 cut(s) 156, 169, 267
BamHI GGATCC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 319, 412, 532
BccI CCATC 5 cut(s) 23, 62, 280, 382, 574
BceAI ACGGC 1 cut(s) 28
BciVI GTATCC 1 cut(s) 269
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 154, 173
BcoDI GTCTC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 5 cut(s) 231, 308, 401, 529, 546
BlsI GCNGC 5 cut(s) 232, 309, 402, 530, 547
Bme1390I CCNGG 2 cut(s) 154, 173
Bme18I GGWCC 3 cut(s) 156, 169, 267
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 4 cut(s) 156, 169, 267, 352
BmiI GGNNCC 5 cut(s) 158, 171, 177, 250, 503
BmrFI CCNGG 2 cut(s) 154, 173
BplI GAGNNNNNCTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 154, 173
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 403, 555
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 520
BseGI GGATG 2 cut(s) 393, 585
BseLI CCNNNNNNNGG 3 cut(s) 166, 403, 555
BseMII CTCAG 3 cut(s) 35, 402, 461
BseNI ACTGG 1 cut(s) 520
BseXI GCAGC 3 cut(s) 319, 412, 532
BshFI GGCC 3 cut(s) 14, 93, 354
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 7 cut(s) 68, 90, 154, 167, 173, 404, 549
BslFI GGGAC 3 cut(s) 10, 17, 155
BslI CCNNNNNNNGG 3 cut(s) 166, 403, 555
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 10, 17, 155
BsnI GGCC 3 cut(s) 14, 93, 354
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 2 cut(s) 175, 301
BspACI CCGC 4 cut(s) 65, 150, 230, 528
BspANI GGCC 3 cut(s) 14, 93, 354
BspCNI CTCAG 3 cut(s) 34, 403, 462
BspLI GGNNCC 5 cut(s) 158, 171, 177, 250, 503
BspPI GGATC 2 cut(s) 170, 183
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 175, 301
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 91, 95
BstDEI CTNAG 3 cut(s) 21, 411, 470
BstF5I GGATG 2 cut(s) 393, 585
BstKTI GATC 2 cut(s) 178, 304
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 175, 301
BstSCI CCNGG 2 cut(s) 152, 171
BstV1I GCAGC 3 cut(s) 319, 412, 532
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 3 cut(s) 14, 93, 354
BtsCI GGATG 2 cut(s) 393, 585
Cac8I GCNNGC 2 cut(s) 91, 95
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 156, 169, 267, 352
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 143, 313, 367, 590
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 3 cut(s) 21, 411, 470
DpnI GATC 2 cut(s) 177, 303
DpnII GATC 2 cut(s) 175, 301
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 54
Eco47I GGWCC 3 cut(s) 156, 169, 267
Eco88I CYCGRG 1 cut(s) 8
FaeI CATG 4 cut(s) 146, 316, 370, 593
FaiI YATR 7 cut(s) 144, 314, 368, 440, 452, 488, 591
FaqI GGGAC 3 cut(s) 10, 17, 155
FatI CATG 4 cut(s) 142, 312, 366, 589
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 5 cut(s) 231, 308, 401, 529, 546
FokI GGATG 2 cut(s) 400, 592
Fsp4HI GCNGC 5 cut(s) 231, 308, 401, 529, 546
GluI GCNGC 5 cut(s) 231, 308, 401, 529, 546
HaeIII GGCC 3 cut(s) 14, 93, 354
HapII CCGG 7 cut(s) 68, 90, 154, 167, 173, 404, 549
Hin1II CATG 4 cut(s) 146, 316, 370, 593
HinfI GANTC 6 cut(s) 4, 71, 114, 188, 407, 538
HpaII CCGG 7 cut(s) 68, 90, 154, 167, 173, 404, 549
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 5 cut(s) 113, 180, 333, 412, 495
Hpy188III TCNNGA 5 cut(s) 8, 82, 299, 322, 511
Hpy99I CGWCG 2 cut(s) 352, 576
HpyAV CCTTC 3 cut(s) 88, 204, 239
HpyCH4III ACNGT 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 21, 411, 470
Hsp92II CATG 4 cut(s) 146, 316, 370, 593
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 175, 301
LmnI GCTCC 4 cut(s) 67, 151, 248, 437
Lsp1109I GCAGC 3 cut(s) 319, 412, 532
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 177, 303
MboI GATC 2 cut(s) 175, 301
MboII GAAGA 1 cut(s) 49
MflI RGATCY 1 cut(s) 175
MluCI AATT 2 cut(s) 162, 552
MlyI GAGTC 3 cut(s) 65, 123, 197
MroNI GCCGGC 1 cut(s) 89
MspI CCGG 7 cut(s) 68, 90, 154, 167, 173, 404, 549
MspR9I CCNGG 2 cut(s) 154, 173
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 154, 173
NdeII GATC 2 cut(s) 175, 301
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 4 cut(s) 146, 316, 370, 593
NlaIV GGNNCC 5 cut(s) 158, 171, 177, 250, 503
NmuCI GTSAC 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 8
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 407, 538
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 5 cut(s) 232, 309, 402, 530, 547
PleI GAGTC 3 cut(s) 65, 122, 196
PpsI GAGTC 3 cut(s) 65, 122, 196
PspN4I GGNNCC 5 cut(s) 158, 171, 177, 250, 503
PspPI GGNCC 4 cut(s) 156, 169, 267, 352
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SatI GCNGC 5 cut(s) 231, 308, 401, 529, 546
Sau3AI GATC 2 cut(s) 175, 301
Sau96I GGNCC 4 cut(s) 156, 169, 267, 352
SchI GAGTC 3 cut(s) 65, 123, 197
ScrFI CCNGG 2 cut(s) 154, 173
SetI ASST 9 cut(s) 135, 269, 312, 382, 417, 487, 510, 547, 599
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 3 cut(s) 156, 169, 267
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 2 cut(s) 8, 509
SmoI CTYRAG 2 cut(s) 8, 509
Sse9I AATT 2 cut(s) 162, 552
SsiI CCGC 4 cut(s) 65, 150, 230, 528
StyD4I CCNGG 2 cut(s) 152, 171
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 9, 117, 129, 200
TasI AATT 2 cut(s) 162, 552
TauI GCSGC 2 cut(s) 233, 531
TfiI GAWTC 2 cut(s) 407, 538
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 3 cut(s) 307, 400, 545
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 186, 282
VpaK11BI GGWCC 3 cut(s) 156, 169, 267
XapI RAATTY 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.