Prupe.1G322000_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000614
Physical Location & Seq
Forward (+)
30809928 .. 30811578
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G322000.1

Sequence Viewer

Length: 1029 bp
ATGGCCGCACTGCTGCTCGTCTCCCTCATCCTCCTTTCACTCCTCTCTCTCTCCTCTTCCCTCCCCAACCAAGCCGTCCTCGACGCCGCCGAAATCCTCTCGGATTCAGGCTTCGTCTCTATGGCTCTGACTCTCGAGCTCGTCTCTCAGTCCCTCGTCCCACAGTCCCCTTCTCTCACCATCTTCGCTCCACCAGACACCGCCTTCACCCGATCGGGTCAGCCCTCCCTCTCTCTGCTCCAAATCCACTTCTGCCCTCTCCCTCTGCCCCTCCAGACCCTCAAAGCCCTCCCCGCCGGCACCAAGATCCCAACTTTGCTATCTGGGCACTCTCTCATCGTCACCACACCGTCCTCCGGCGCCCCAATTTCACTCAACAACGTCAAGATTACATCCGCAGCGCCCCTTTACGATGATGGGTTTTTGATCATTTTCGGAGTTGATAAATTTTTCGACGCCAATTTTCAGCTTCCCATCCCAATTCGGAGCCCCGTTCCAGATCCTGTATGTGAGTCTTCGACATCGTCATCGTCAGCGAACGTTACAACCACAATTGGGTTTCCGGGTGCTTCTTGGTTTGAAGGAGCGAGTGCGGTTCTGAGGTCAAATGGGTACAATGTCATGGCCTCGTTTCTTGATTTACAGCTTGTGGGGTTCAAGAACCCGAATTCGATGACTGTCTTTGCTCCTCTTGACCAAGCAATTGAGAACCCTCTGCAATACCCTTCCATCTTTCTCCGACATGTCGTTCCCTGCCGGCTTTTGTGGAGCGATTTGGTGCGTTTCAACGAAGGGACTGTTTTGCCGACGTATATGGAGGGGTTTACTATCACCATCTCCAGGTCTGGTGACGTGTTGTTGCTTAATGGAGTTCCGGTTTTCTTTGCGAACATGTACTACAGCGACTCCTTGGTTGTTCATGGTCTCCGCGAGAGTCTTGTAATGCTAGAGATGCCAGAAGTTGCAGATGAGTCTTCACCTGAGAGTGGAACCAACGATGAGGTGCCTTTTGATAATACTGAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

343

Amino Acids

36.69

Weight (kDa)

4.36

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 299, 359, 1003
AccII CGCG 1 cut(s) 930
AciI CCGC 7 cut(s) 6, 87, 201, 294, 396, 593, 928
AclI AACGTT 1 cut(s) 540
AclWI GGATC 2 cut(s) 301, 494
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 446, 667
AcyI GRCGYC 3 cut(s) 84, 360, 456
AfaI GTAC 2 cut(s) 614, 896
AfiI CCNNNNNNNGG 4 cut(s) 356, 555, 840, 986
AflIII ACRYGT 3 cut(s) 742, 852, 891
AgsI TTSAA 3 cut(s) 581, 658, 787
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 1 cut(s) 839
AluBI AGCT 3 cut(s) 139, 469, 646
AluI AGCT 3 cut(s) 139, 469, 646
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 4 cut(s) 25, 121, 148, 929
AlwI GGATC 2 cut(s) 301, 494
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 3, 624
ApeKI GCWGC 2 cut(s) 13, 398
ApoI RAATTY 2 cut(s) 446, 667
AspLEI GCGC 2 cut(s) 362, 403
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 6 cut(s) 169, 199, 334, 823, 860, 969
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 3 cut(s) 299, 359, 1003
BanII GRGCYC 2 cut(s) 141, 491
BbsI GAAGAC 2 cut(s) 507, 966
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 410
BccI CCATC 5 cut(s) 188, 410, 482, 737, 842
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 841
BclI TGATCA 1 cut(s) 426
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 4 cut(s) 25, 121, 148, 929
BfaI CTAG 1 cut(s) 947
BfmI CTRYAG 1 cut(s) 898
BfoI RGCGCY 2 cut(s) 363, 404
BisI GCNGC 4 cut(s) 6, 14, 87, 399
BlsI GCNGC 4 cut(s) 7, 15, 88, 400
Bme1390I CCNGG 2 cut(s) 564, 841
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 853
BmiI GGNNCC 5 cut(s) 301, 361, 488, 991, 1005
BmrFI CCNGG 2 cut(s) 564, 841
BmsI GCATC 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 507, 966
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 2 cut(s) 257, 823
BpuMI CCSGG 1 cut(s) 564
BsaHI GRCGYC 3 cut(s) 84, 360, 456
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 1 cut(s) 909
BsaWI WCCGGW 1 cut(s) 874
BsaXI ACNNNNNCTCC 4 cut(s) 861, 890, 891, 920
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 555, 840, 986
Bse118I RCCGGY 2 cut(s) 296, 756
BseBI CCWGG 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 909
BseGI GGATG 3 cut(s) 27, 392, 474
BseLI CCNNNNNNNGG 4 cut(s) 356, 555, 840, 986
BseMII CTCAG 4 cut(s) 161, 590, 972, 1011
BseRI GAGGAG 3 cut(s) 32, 43, 678
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 930
Bsh1285I CGRYCG 1 cut(s) 215
BshFI GGCC 2 cut(s) 5, 626
BshNI GGYRCC 3 cut(s) 299, 359, 1003
BsiEI CGRYCG 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 5 cut(s) 297, 357, 563, 757, 875
BslFI GGGAC 4 cut(s) 136, 143, 151, 808
BslI CCNNNNNNNGG 4 cut(s) 356, 555, 840, 986
BsmAI GTCTC 4 cut(s) 25, 121, 148, 929
BsmBI CGTCTC 3 cut(s) 25, 121, 148
BsmFI GGGAC 4 cut(s) 136, 143, 151, 808
BsnI GGCC 2 cut(s) 5, 626
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 141, 330, 491
Bsp143I GATC 4 cut(s) 212, 306, 426, 499
BspACI CCGC 7 cut(s) 6, 87, 201, 294, 396, 593, 928
BspANI GGCC 2 cut(s) 5, 626
BspCNI CTCAG 4 cut(s) 160, 591, 973, 1012
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 5 cut(s) 301, 361, 488, 991, 1005
BspPI GGATC 2 cut(s) 301, 494
BspT107I GGYRCC 3 cut(s) 299, 359, 1003
BspTNI GGTCTC 1 cut(s) 929
BsrFI RCCGGY 2 cut(s) 296, 756
BssAI RCCGGY 2 cut(s) 296, 756
BssECI CCNNGG 1 cut(s) 909
BssMI GATC 4 cut(s) 212, 306, 426, 499
BssNI GRCGYC 3 cut(s) 84, 360, 456
BssT1I CCWWGG 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 4 cut(s) 165, 351, 679, 799
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 3 cut(s) 84, 360, 456
BstC8I GCNNGC 2 cut(s) 298, 758
BstDEI CTNAG 4 cut(s) 147, 599, 981, 1020
BstF5I GGATG 3 cut(s) 27, 392, 474
BstFNI CGCG 1 cut(s) 930
BstH2I RGCGCY 2 cut(s) 363, 404
BstHHI GCGC 2 cut(s) 362, 403
BstKTI GATC 4 cut(s) 215, 309, 429, 502
BstMAI GTCTC 4 cut(s) 25, 121, 148, 929
BstMBI GATC 4 cut(s) 212, 306, 426, 499
BstMCI CGRYCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 3 cut(s) 293, 325, 952
BstNI CCWGG 1 cut(s) 841
BstNSI RCATGY 2 cut(s) 746, 895
BstSCI CCNGG 2 cut(s) 562, 839
BstSFI CTRYAG 1 cut(s) 898
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 2 cut(s) 507, 966
BstX2I RGATCY 2 cut(s) 306, 499
BstYI RGATCY 2 cut(s) 306, 499
BsuRI GGCC 2 cut(s) 5, 626
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 3 cut(s) 27, 392, 474
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 298, 758
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 2 cut(s) 362, 403
Cfr10I RCCGGY 2 cut(s) 296, 756
CseI GACGC 2 cut(s) 92, 464
Csp6I GTAC 2 cut(s) 613, 895
CviAII CATG 4 cut(s) 622, 743, 892, 920
CviQI GTAC 2 cut(s) 613, 895
DdeI CTNAG 4 cut(s) 147, 599, 981, 1020
DinI GGCGCC 1 cut(s) 361
DpnI GATC 4 cut(s) 214, 308, 428, 501
DpnII GATC 4 cut(s) 212, 306, 426, 499
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 909
Eco24I GRGCYC 2 cut(s) 141, 491
Eco31I GGTCTC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 909
EcoT38I GRGCYC 2 cut(s) 141, 491
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 909
Esp3I CGTCTC 3 cut(s) 25, 121, 148
FaeI CATG 4 cut(s) 625, 746, 895, 923
FaiI YATR 8 cut(s) 122, 508, 623, 744, 813, 815, 893, 921
FaqI GGGAC 4 cut(s) 136, 143, 151, 808
FatI CATG 4 cut(s) 621, 742, 891, 919
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 6, 14, 87, 399
FokI GGATG 3 cut(s) 14, 379, 461
FriOI GRGCYC 2 cut(s) 141, 491
Fsp4HI GCNGC 4 cut(s) 6, 14, 87, 399
FspBI CTAG 1 cut(s) 947
GlaI GCGC 2 cut(s) 361, 402
GluI GCNGC 4 cut(s) 6, 14, 87, 399
GsuI CTGGAG 2 cut(s) 257, 823
HaeII RGCGCY 2 cut(s) 363, 404
HaeIII GGCC 2 cut(s) 5, 626
HapII CCGG 5 cut(s) 297, 357, 563, 757, 875
HgaI GACGC 2 cut(s) 92, 464
HhaI GCGC 2 cut(s) 362, 403
Hin1I GRCGYC 3 cut(s) 84, 360, 456
Hin1II CATG 4 cut(s) 625, 746, 895, 923
Hin6I GCGC 2 cut(s) 360, 401
HinP1I GCGC 2 cut(s) 360, 401
HinfI GANTC 6 cut(s) 104, 130, 512, 905, 934, 971
HpaII CCGG 5 cut(s) 297, 357, 563, 757, 875
HphI GGTGA 6 cut(s) 169, 199, 334, 823, 860, 969
Hpy166II GTNNAC 1 cut(s) 825
Hpy188I TCNGA 6 cut(s) 103, 129, 437, 486, 600, 740
Hpy188III TCNNGA 7 cut(s) 134, 274, 385, 497, 635, 658, 692
Hpy8I GTNNAC 1 cut(s) 825
Hpy99I CGWCG 3 cut(s) 86, 458, 811
HpyAV CCTTC 5 cut(s) 180, 214, 575, 735, 785
HpyCH4III ACNGT 4 cut(s) 165, 351, 679, 799
HpyCH4IV ACGT 4 cut(s) 381, 540, 809, 852
HpyCH4V TGCA 2 cut(s) 718, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 325, 952
HpyF3I CTNAG 4 cut(s) 147, 599, 981, 1020
HpySE526I ACGT 4 cut(s) 381, 540, 809, 852
Hsp92I GRCGYC 3 cut(s) 84, 360, 456
Hsp92II CATG 4 cut(s) 625, 746, 895, 923
HspAI GCGC 2 cut(s) 360, 401
KasI GGCGCC 1 cut(s) 359
KroI GCCGGC 2 cut(s) 296, 756
KroNI GCCGGC 2 cut(s) 298, 758
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 4 cut(s) 212, 306, 426, 499
LmnI GCTCC 6 cut(s) 193, 243, 486, 584, 691, 768
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 942
MaeI CTAG 1 cut(s) 947
MaeII ACGT 4 cut(s) 381, 540, 809, 852
MaeIII GTNAC 3 cut(s) 340, 541, 848
MalI GATC 4 cut(s) 214, 308, 428, 501
MboI GATC 4 cut(s) 212, 306, 426, 499
MboII GAAGA 4 cut(s) 48, 175, 507, 966
MfeI CAATTG 2 cut(s) 552, 702
MflI RGATCY 2 cut(s) 306, 499
MhlI GDGCHC 3 cut(s) 141, 330, 491
MluCI AATT 7 cut(s) 366, 446, 460, 480, 552, 667, 702
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 5 cut(s) 124, 521, 899, 943, 980
MmeI TCCRAC 1 cut(s) 763
MroNI GCCGGC 2 cut(s) 296, 756
MseI TTAA 2 cut(s) 864, 1027
MspI CCGG 5 cut(s) 297, 357, 563, 757, 875
MspR9I CCNGG 2 cut(s) 564, 841
MunI CAATTG 2 cut(s) 552, 702
MvaI CCWGG 1 cut(s) 841
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 3 cut(s) 293, 325, 952
NaeI GCCGGC 2 cut(s) 298, 758
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 564
NdeII GATC 4 cut(s) 212, 306, 426, 499
NgoMIV GCCGGC 2 cut(s) 296, 756
NlaIII CATG 4 cut(s) 625, 746, 895, 923
NlaIV GGNNCC 5 cut(s) 301, 361, 488, 991, 1005
NmuCI GTSAC 2 cut(s) 340, 848
NspI RCATGY 2 cut(s) 746, 895
PaeR7I CTCGAG 1 cut(s) 134
PciI ACATGT 2 cut(s) 742, 891
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 2 cut(s) 298, 758
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 523
PkrI GCNGC 4 cut(s) 7, 15, 88, 400
Ple19I CGATCG 1 cut(s) 215
PleI GAGTC 5 cut(s) 124, 520, 899, 942, 979
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 5 cut(s) 124, 520, 899, 942, 979
PscI ACATGT 2 cut(s) 742, 891
Psp124BI GAGCTC 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 839
PspGI CCWGG 1 cut(s) 839
PspN4I GGNNCC 5 cut(s) 301, 361, 488, 991, 1005
PsrI GAACNNNNNNTAC 2 cut(s) 881, 913
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 306, 499
PsyI GACNNNGTC 1 cut(s) 523
PvuI CGATCG 1 cut(s) 215
RsaI GTAC 2 cut(s) 614, 896
RsaNI GTAC 2 cut(s) 613, 895
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 864, 1027
SatI GCNGC 4 cut(s) 6, 14, 87, 399
Sau3AI GATC 4 cut(s) 212, 306, 426, 499
SchI GAGTC 5 cut(s) 124, 521, 899, 943, 980
ScrFI CCNGG 2 cut(s) 564, 841
SduI GDGCHC 3 cut(s) 141, 330, 491
SfaNI GCATC 1 cut(s) 942
SfcI CTRYAG 1 cut(s) 898
SfoI GGCGCC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 7 cut(s) 366, 446, 460, 480, 552, 667, 702
SsiI CCGC 7 cut(s) 6, 87, 201, 294, 396, 593, 928
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 1 cut(s) 947
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 562, 839
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 4 cut(s) 165, 351, 679, 799
TaiI ACGT 4 cut(s) 384, 543, 812, 855
TaqI TCGA 5 cut(s) 81, 135, 453, 518, 671
TasI AATT 7 cut(s) 366, 446, 460, 480, 552, 667, 702
TatI WGTACW 1 cut(s) 894
TauI GCSGC 2 cut(s) 8, 89
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 864, 1027
Tru9I TTAA 2 cut(s) 864, 1027
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 340, 848
TseI GCWGC 2 cut(s) 13, 398
Tsp45I GTSAC 2 cut(s) 340, 848
TspDTI ATGAA 1 cut(s) 908
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 1 cut(s) 523
XapI RAATTY 2 cut(s) 446, 667
XceI RCATGY 2 cut(s) 746, 895
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.