Rh7BG247300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000614
Physical Location & Seq
Forward (+)
22099506 .. 22099697
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG247300.1

Sequence Viewer

Length: 192 bp
ATGGCTCTCACGCTCGAGGTCGTCTCTCAGTTGCTCGTCCCCAAGTCTCCGTCGCTCACCATCTTCGCGTCGTCGGACTCGGCCTTCAAGCGAGCCGGCCAACCCTCCCTCTCTCTCCTCCAATTCCACTTCATCATTGTTGGTATTCTGAAAATTTCAGTTCAGCTATGGCGACTTATAGGTTATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

63

Amino Acids

6.92

Weight (kDa)

9.99

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 153
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 166, 189
AluI AGCT 2 cut(s) 166, 189
Alw26I GTCTC 2 cut(s) 28, 51
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 81, 97
ApoI RAATTY 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 14
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 28, 51
BmeT110I CYCGRG 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bse118I RCCGGY 1 cut(s) 95
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 83, 99
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 28, 51
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 83, 99
BsoBI CYCGRG 1 cut(s) 14
BspANI GGCC 2 cut(s) 83, 99
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 93, 97
BstDEI CTNAG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 68
BstMAI GTCTC 2 cut(s) 28, 51
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 83, 99
Cac8I GCNNGC 2 cut(s) 93, 97
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 57
CviJI RGCY 6 cut(s) 5, 83, 95, 99, 166, 189
CviKI_1 RGCY 6 cut(s) 5, 83, 95, 99, 166, 189
DdeI CTNAG 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 28
FaiI YATR 3 cut(s) 169, 179, 186
FaqI GGGAC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 83, 99
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 76, 150
Hpy99I CGWCG 3 cut(s) 55, 73, 76
HpyAV CCTTC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 27
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 109
MboII GAAGA 1 cut(s) 55
MluCI AATT 2 cut(s) 122, 153
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 10, 115, 119, 128
MroNI GCCGGC 1 cut(s) 95
MspI CCGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 14
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 21, 168, 184, 191
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 122, 153
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 122, 153
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 39
XapI RAATTY 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.