Rorug04G0328900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000614
Physical Location & Seq
Reverse (-)
50349718 .. 50350378
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0328900.1

Sequence Viewer

Length: 477 bp
ATGAAAGGCTCCATCCAAGTCTTCTTTCTGCTAGCCATGCTAATGGCTTTAGCTGCCATTACTCTTTCCGCATCAACCCCGGAAGAAGATCAACAGGAATGGTTCTCCGATGAGGAAAATGATACTCCAAATGAACCATCCGATGATCTCCCTGCGACCTTAAGCCAACCAAAAACTTCCCTTAGGGGAGCAAGCCGCTTCCTTGCCACTCGGGCTGTTGCGACTACCTGTGACAAAAACCCTAAGGTTTGTAAGGCTGCAGGCAGTGCGGGGCGAGATTGCTGCAAGAAGAAGTGTGTGGATGTGAAGACGGACAGAGACAATTGCGGCAAGTGTGGGAAGAAATGCAAGTACTCGGAGATATGCTGCAAAGGCAAGTGTCTGAATCCAATGGCTGACAAGAAAAACTGTGGGAGCTGCAACAACAAGTGCAAGAAAGGCAGTTCGTGTGTGTACGGAATGTGCAGCTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

158

Amino Acids

17.04

Weight (kDa)

8.66

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 75 - 158 8.1e-30 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 69, 196, 269, 327
AfaI GTAC 2 cut(s) 353, 455
AflII CTTAAG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 3 cut(s) 53, 417, 468
AluI AGCT 3 cut(s) 53, 417, 468
Alw26I GTCTC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 210
ApeKI GCWGC 6 cut(s) 53, 257, 282, 366, 417, 465
AsuC2I CCSGG 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 210
AxyI CCTNAGG 2 cut(s) 182, 243
BbsI GAAGAC 2 cut(s) 13, 314
BbvI GCAGC 5 cut(s) 40, 244, 269, 353, 404
BccI CCATC 2 cut(s) 20, 145
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 8 cut(s) 54, 196, 258, 283, 328, 367, 418, 466
BlsI GCNGC 8 cut(s) 55, 197, 259, 284, 329, 368, 419, 467
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 80
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 2 cut(s) 13, 314
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 78
Bse21I CCTNAGG 2 cut(s) 182, 243
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 12, 137, 307
BseXI GCAGC 5 cut(s) 40, 244, 269, 353, 404
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 210
Bsp143I GATC 2 cut(s) 88, 145
BspACI CCGC 4 cut(s) 69, 196, 269, 327
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 88, 145
Bst4CI ACNGT 1 cut(s) 410
BstAFI CTTAAG 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 33, 193, 262
BstDEI CTNAG 2 cut(s) 182, 243
BstF5I GGATG 3 cut(s) 12, 137, 307
BstKTI GATC 2 cut(s) 91, 148
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 88, 145
BstMWI GCNNNNNNNGC 6 cut(s) 37, 53, 212, 266, 372, 438
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 5 cut(s) 40, 244, 269, 353, 404
BstV2I GAAGAC 2 cut(s) 13, 314
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu36I CCTNAGG 2 cut(s) 182, 243
BtsCI GGATG 3 cut(s) 12, 137, 307
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 33, 193, 262
Csp6I GTAC 2 cut(s) 352, 454
CviAII CATG 1 cut(s) 37
CviQI GTAC 2 cut(s) 352, 454
DdeI CTNAG 2 cut(s) 182, 243
DpnI GATC 2 cut(s) 90, 147
DpnII GATC 2 cut(s) 88, 145
Eco81I CCTNAGG 2 cut(s) 182, 243
Eco88I CYCGRG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 475
FaeI CATG 1 cut(s) 40
FaiI YATR 4 cut(s) 38, 364, 471, 475
FatI CATG 1 cut(s) 36
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 8 cut(s) 54, 196, 258, 283, 328, 367, 418, 466
FokI GGATG 2 cut(s) 124, 314
Fsp4HI GCNGC 8 cut(s) 54, 196, 258, 283, 328, 367, 418, 466
FspBI CTAG 1 cut(s) 32
GluI GCNGC 8 cut(s) 54, 196, 258, 283, 328, 367, 418, 466
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 40
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 109, 142, 358, 384
Hpy8I GTNNAC 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 8 cut(s) 260, 285, 348, 369, 420, 432, 465, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 53, 212, 266, 372, 438
HpyF3I CTNAG 2 cut(s) 182, 243
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 88, 145
LmnI GCTCC 3 cut(s) 14, 188, 414
LpnPI CCDG 5 cut(s) 80, 93, 165, 241, 246
Lsp1109I GCAGC 5 cut(s) 40, 244, 269, 353, 404
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 90, 147
MboI GATC 2 cut(s) 88, 145
MboII GAAGA 6 cut(s) 13, 95, 98, 301, 319, 352
MfeI CAATTG 1 cut(s) 322
MluCI AATT 1 cut(s) 322
MnlI CCTC 1 cut(s) 106
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 322
MwoI GCNNNNNNNGC 6 cut(s) 37, 53, 212, 266, 372, 438
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 88, 145
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 475
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 8 cut(s) 55, 197, 259, 284, 329, 368, 419, 467
PspN4I GGNNCC 1 cut(s) 10
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 2 cut(s) 353, 455
RsaNI GTAC 2 cut(s) 352, 454
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 8 cut(s) 54, 196, 258, 283, 328, 367, 418, 466
Sau3AI GATC 2 cut(s) 88, 145
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 80
SetI ASST 6 cut(s) 55, 161, 230, 249, 419, 470
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 1 cut(s) 322
SsiI CCGC 4 cut(s) 69, 196, 269, 327
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 410
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 198, 330
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 53, 257, 282, 366, 417, 465
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 17, 147
TspGWI ACGGA 2 cut(s) 326, 471
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 160
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.