Rmu_sc0000424.1_g000030

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
Physical Location & Seq
Reverse (-)
120764 .. 121975
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000424.1_g000030.1.cds

Sequence Viewer

Length: 1212 bp
atggcttcttcttcttcaacctcactcttcttcttcttctctctcctcctcacctctctcctctccttctcctccgcccaaaccatcaccaacgccgccgagatcctctccgattccggctacaaatccatgtccttcgccctcgtcctcgcctctcactccatcacctcccagtcgccgtctctcaccgtcttcgctccggccgacgccgccttatccaactccggccaccccacgctcaacctcctccgctaccacctcctccccatcgctttccctctccgatcactcaagtccctcccgttcggtgccaagatcgccactctgctcgacggccactctctcaccgtcaccactctgccgtccgaccgcctcgtctcgctcaacaacgtcaccgtcacggcgtccccaattttcgacgacgggtcgttgatcatcttcggaaccaacaaattcttcgacccgtatttccggatctcgggtccgattcggagctatagccccaagaatctccgctgcttggcgcagcgaaaccctaacgaagctatggcggtggaaacggcggcgcattacccgttcagtgaagcaagcaaggtgctgaaattgaaaggctgctctgttatggcttcgtttcttgaaatgcaattccatgggtttctcaagtaccagaccatgttgaccgtcttcgctcccgttggccaagccatggtgccccgaatcggagatctgagcgggtactcgtcgatcttccgccgccacgtggtcccctgcatgctttcttggaacgatttggtgagtctatacgacggccctgtgttgaggactaatctgcaagcgtttatgatcaacatcactcgatccgacggcgttttggtgctcaatggggtcccggtgataatgccggagatgtatcacaacggctggcttgtggttcacggaatcagtgaggttcttgagtttccagagagtccaccggagcaagtggtggctccttcacctgtctctgaggcagatggtcacagctccggtgaggatgagagtgccggaacagagcctccggagccagtaatagaggtgccttcttcaccggaattcgatagcagcgattcggaggaattagataccggcgattctgagctatttgctaacatgtcttccgaggatgaaggagccatttcacacaggcgcttctttgtttacaggccttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

403

Amino Acids

43.79

Weight (kDa)

5.04

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB1I GGYRCC 3 cut(s) 308, 709, 1075
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 732
AccIII TCCGGA 2 cut(s) 471, 1057
AclWI GGATC 3 cut(s) 97, 482, 852
AcoI YGGCCR 4 cut(s) 201, 226, 334, 697
AcsI RAATTY 2 cut(s) 452, 1091
AcvI CACGTG 1 cut(s) 760
AcyI GRCGYC 2 cut(s) 207, 404
AfaI GTAC 2 cut(s) 665, 737
AfiI CCNNNNNNNGG 5 cut(s) 478, 520, 706, 719, 760
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 3 cut(s) 18, 607, 638
AhdI GACNNNNNGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 1039, 1071
AluBI AGCT 4 cut(s) 495, 545, 1023, 1138
AluI AGCT 4 cut(s) 495, 545, 1023, 1138
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 186, 382, 1006
AlwI GGATC 3 cut(s) 97, 482, 852
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 2 cut(s) 471, 1057
AoxI GGCC 6 cut(s) 201, 226, 334, 697, 808, 1202
ApeKI GCWGC 4 cut(s) 516, 526, 612, 1101
ApoI RAATTY 2 cut(s) 452, 1091
AspLEI GCGC 3 cut(s) 526, 568, 1188
AspS9I GGNCC 4 cut(s) 482, 763, 809, 886
AsuC2I CCSGG 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 3 cut(s) 482, 763, 886
BaeGI GKGCMC 1 cut(s) 714
BalI TGGCCA 1 cut(s) 699
BanI GGYRCC 3 cut(s) 308, 709, 1075
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 3 cut(s) 184, 676, 1146
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 4 cut(s) 503, 538, 599, 1113
BccI CCATC 4 cut(s) 92, 170, 275, 1007
BceAI ACGGC 8 cut(s) 163, 346, 349, 417, 576, 823, 880, 934
BclI TGATCA 2 cut(s) 432, 843
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 186, 382, 1006
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 1189
BglII AGATCT 1 cut(s) 724
BisI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1102
BlsI GCNGC 8 cut(s) 97, 211, 518, 528, 565, 614, 755, 1103
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 482, 763, 886
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 4 cut(s) 482, 763, 809, 886
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 184, 676, 1146
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpuEI CTTGAG 3 cut(s) 275, 644, 974
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 848
BsaHI GRCGYC 2 cut(s) 207, 404
BsaJI CCNNGG 3 cut(s) 649, 705, 1158
BsaWI WCCGGW 5 cut(s) 471, 973, 1025, 1057, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 1039, 1069
Bsc4I CCNNNNNNNGG 5 cut(s) 478, 520, 706, 719, 760
Bse118I RCCGGY 1 cut(s) 1124
Bse1I ACTGG 2 cut(s) 172, 1064
Bse8I GATNNNNATC 1 cut(s) 848
BseAI TCCGGA 2 cut(s) 471, 1057
BseDI CCNNGG 3 cut(s) 649, 705, 1158
BseGI GGATG 2 cut(s) 1039, 1168
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 5 cut(s) 478, 520, 706, 719, 760
BseMII CTCAG 3 cut(s) 719, 996, 1125
BseNI ACTGG 2 cut(s) 172, 1064
BseRI GAGGAG 6 cut(s) 35, 38, 50, 61, 236, 251
BseSI GKGCMC 1 cut(s) 714
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 4 cut(s) 503, 538, 599, 1113
Bsh1285I CGRYCG 2 cut(s) 204, 370
BshFI GGCC 6 cut(s) 203, 228, 336, 699, 810, 1204
BshNI GGYRCC 3 cut(s) 308, 709, 1075
BsiEI CGRYCG 2 cut(s) 204, 370
BsiHKAI GWGCWC 1 cut(s) 879
BsiHKCI CYCGRG 1 cut(s) 478
BslFI GGGAC 4 cut(s) 280, 391, 749, 872
BslI CCNNNNNNNGG 5 cut(s) 478, 520, 706, 719, 760
BsmAI GTCTC 3 cut(s) 186, 382, 1006
BsmBI CGTCTC 2 cut(s) 186, 382
BsmFI GGGAC 4 cut(s) 280, 391, 749, 872
BsnI GGCC 6 cut(s) 203, 228, 336, 699, 810, 1204
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 2 cut(s) 714, 879
Bsp13I TCCGGA 2 cut(s) 471, 1057
Bsp143I GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
Bsp19I CCATGG 2 cut(s) 649, 705
BspANI GGCC 6 cut(s) 203, 228, 336, 699, 810, 1204
BspCNI CTCAG 3 cut(s) 720, 997, 1126
BspEI TCCGGA 2 cut(s) 471, 1057
BspPI GGATC 3 cut(s) 97, 482, 852
BspT107I GGYRCC 3 cut(s) 308, 709, 1075
BsrBI CCGCTC 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 1124
BsrI ACTGG 2 cut(s) 172, 1064
BssAI RCCGGY 1 cut(s) 1124
BssECI CCNNGG 3 cut(s) 649, 705, 1158
BssMI GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
BssNI GRCGYC 2 cut(s) 207, 404
BssT1I CCWWGG 2 cut(s) 649, 705
Bst4CI ACNGT 4 cut(s) 190, 349, 397, 682
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 207, 404
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 589, 773, 834, 923
BstDEI CTNAG 3 cut(s) 728, 1005, 1134
BstDSI CCRYGG 2 cut(s) 649, 705
BstF5I GGATG 2 cut(s) 1039, 1168
BstH2I RGCGCY 1 cut(s) 1189
BstHHI GCGC 3 cut(s) 526, 568, 1188
BstKTI GATC 9 cut(s) 105, 287, 318, 435, 477, 727, 747, 846, 860
BstMAI GTCTC 3 cut(s) 186, 382, 1006
BstMBI GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
BstMCI CGRYCG 2 cut(s) 204, 370
BstMWI GCNNNNNNNGC 3 cut(s) 209, 317, 1060
BstNSI RCATGY 2 cut(s) 775, 1153
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 4 cut(s) 503, 538, 599, 1113
BstV2I GAAGAC 3 cut(s) 184, 676, 1146
BstX2I RGATCY 3 cut(s) 102, 474, 724
BstYI RGATCY 3 cut(s) 102, 474, 724
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 6 cut(s) 203, 228, 336, 699, 810, 1204
BtgI CCRYGG 2 cut(s) 649, 705
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 1039, 1168
BtsIMutI CAGTG 2 cut(s) 586, 949
Cac8I GCNNGC 4 cut(s) 589, 773, 834, 923
CfoI GCGC 3 cut(s) 526, 568, 1188
Cfr10I RCCGGY 1 cut(s) 1124
Cfr13I GGNCC 4 cut(s) 482, 763, 809, 886
CseI GACGC 2 cut(s) 215, 393
Csp6I GTAC 2 cut(s) 664, 736
CviAII CATG 6 cut(s) 130, 650, 673, 706, 772, 1150
CviQI GTAC 2 cut(s) 664, 736
DdeI CTNAG 3 cut(s) 728, 1005, 1134
DpnI GATC 9 cut(s) 104, 286, 317, 434, 476, 726, 746, 845, 859
DpnII GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
DrdI GACNNNNNNGTC 1 cut(s) 374
DriI GACNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 4 cut(s) 201, 226, 334, 697
EagI CGGCCG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 64, 740
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 649, 705
Eco147I AGGCCT 1 cut(s) 1204
Eco47I GGWCC 3 cut(s) 482, 763, 886
Eco52I CGGCCG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 1091
EcoT14I CCWWGG 2 cut(s) 649, 705
ErhI CCWWGG 2 cut(s) 649, 705
Esp3I CGTCTC 2 cut(s) 186, 382
FaeI CATG 6 cut(s) 133, 653, 676, 709, 775, 1153
FaqI GGGAC 4 cut(s) 280, 391, 749, 872
FatI CATG 6 cut(s) 129, 649, 672, 705, 771, 1149
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 2 cut(s) 432, 843
Fnu4HI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1102
FokI GGATG 2 cut(s) 1046, 1175
Fsp4HI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1102
GlaI GCGC 3 cut(s) 525, 567, 1187
GluI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1102
HaeII RGCGCY 1 cut(s) 1189
HaeIII GGCC 6 cut(s) 203, 228, 336, 699, 810, 1204
HgaI GACGC 2 cut(s) 215, 393
HhaI GCGC 3 cut(s) 526, 568, 1188
Hin1I GRCGYC 2 cut(s) 207, 404
Hin1II CATG 6 cut(s) 133, 653, 676, 709, 775, 1153
Hin6I GCGC 3 cut(s) 524, 566, 1186
HinP1I GCGC 3 cut(s) 524, 566, 1186
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HinfI GANTC 9 cut(s) 113, 487, 508, 717, 796, 939, 967, 1106, 1130
Hpy166II GTNNAC 4 cut(s) 678, 934, 971, 1198
Hpy188III TCNNGA 5 cut(s) 472, 635, 953, 962, 1058
Hpy8I GTNNAC 4 cut(s) 678, 934, 971, 1198
Hpy99I CGWCG 7 cut(s) 209, 335, 422, 425, 745, 809, 866
HpyAV CCTTC 5 cut(s) 76, 145, 1002, 1089, 1160
HpyCH4III ACNGT 4 cut(s) 190, 349, 397, 682
HpyCH4IV ACGT 2 cut(s) 390, 759
HpyCH4V TGCA 3 cut(s) 643, 771, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 317, 1060
HpyF3I CTNAG 3 cut(s) 728, 1005, 1134
HpySE526I ACGT 2 cut(s) 390, 759
Hsp92I GRCGYC 2 cut(s) 207, 404
Hsp92II CATG 6 cut(s) 133, 653, 676, 709, 775, 1153
HspAI GCGC 3 cut(s) 524, 566, 1186
KflI GGGWCCC 1 cut(s) 886
Kpn2I TCCGGA 2 cut(s) 471, 1057
Ksp22I TGATCA 2 cut(s) 432, 843
Kzo9I GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
LmnI GCTCC 8 cut(s) 202, 492, 694, 976, 994, 1028, 1060, 1169
Lsp1109I GCAGC 4 cut(s) 503, 538, 599, 1113
MaeII ACGT 2 cut(s) 390, 759
MaeIII GTNAC 4 cut(s) 349, 391, 397, 1016
MalI GATC 9 cut(s) 104, 286, 317, 434, 476, 726, 746, 845, 859
MbiI CCGCTC 1 cut(s) 732
MboI GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
MflI RGATCY 3 cut(s) 102, 474, 724
MhlI GDGCHC 2 cut(s) 714, 879
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 6 cut(s) 411, 452, 602, 644, 1091, 1115
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 2 cut(s) 805, 976
MmeI TCCRAC 3 cut(s) 243, 390, 885
Mox20I TGGCCA 1 cut(s) 699
MroI TCCGGA 2 cut(s) 471, 1057
MscI TGGCCA 1 cut(s) 699
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 890
MwoI GCNNNNNNNGC 3 cut(s) 209, 317, 1060
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 2 cut(s) 649, 705
NdeII GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
NlaIII CATG 6 cut(s) 133, 653, 676, 709, 775, 1153
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 4 cut(s) 349, 391, 397, 1016
NspI RCATGY 2 cut(s) 775, 1153
PaeI GCATGC 1 cut(s) 775
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 1101
PfeI GAWTC 7 cut(s) 113, 487, 508, 717, 939, 1106, 1130
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 8 cut(s) 97, 211, 518, 528, 565, 614, 755, 1103
PleI GAGTC 2 cut(s) 804, 975
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 2 cut(s) 804, 975
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 886
PscI ACATGT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 886
PspCI CACGTG 1 cut(s) 760
PspPI GGNCC 4 cut(s) 482, 763, 809, 886
PspPPI RGGWCCY 1 cut(s) 886
PsuI RGATCY 3 cut(s) 102, 474, 724
RsaI GTAC 2 cut(s) 665, 737
RsaNI GTAC 2 cut(s) 664, 736
SatI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1102
Sau3AI GATC 9 cut(s) 102, 284, 315, 432, 474, 724, 744, 843, 857
Sau96I GGNCC 4 cut(s) 482, 763, 809, 886
SchI GAGTC 2 cut(s) 805, 976
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 2 cut(s) 714, 879
SfcI CTRYAG 1 cut(s) 496
SinI GGWCC 3 cut(s) 482, 763, 886
SmlI CTYRAG 3 cut(s) 290, 659, 953
SmoI CTYRAG 3 cut(s) 290, 659, 953
SphI GCATGC 1 cut(s) 775
Sse9I AATT 6 cut(s) 411, 452, 602, 644, 1091, 1115
SseBI AGGCCT 1 cut(s) 1204
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 649, 705
TaaI ACNGT 4 cut(s) 190, 349, 397, 682
TaiI ACGT 2 cut(s) 393, 762
TaqI TCGA 6 cut(s) 330, 417, 459, 743, 856, 1095
TasI AATT 6 cut(s) 411, 452, 602, 644, 1091, 1115
TauI GCSGC 4 cut(s) 98, 212, 566, 756
TfiI GAWTC 7 cut(s) 113, 487, 508, 717, 939, 1106, 1130
TscAI CASTG 2 cut(s) 586, 949
TseFI GTSAC 4 cut(s) 349, 391, 397, 1016
TseI GCWGC 4 cut(s) 516, 526, 612, 1101
Tsp45I GTSAC 4 cut(s) 349, 391, 397, 1016
TspDTI ATGAA 2 cut(s) 1179, 1197
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 2 cut(s) 586, 949
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 482, 763, 886
XapI RAATTY 2 cut(s) 452, 1091
XceI RCATGY 2 cut(s) 775, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.