Rw4G032890

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000614
Physical Location & Seq
Reverse (-)
59963343 .. 59964347
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032890.1

Sequence Viewer

Length: 1005 bp
ATGTCCCTCGCCCTCGACCTCGCCTCTCACTCCATCACCTCCCAGTTTCCGTCGCTCACCGTCTTCGCTCCGGCCGACCCCGCCTTCGCCAACTCCGGCCACCCCACTCTCAACCTCCTCCGCTACCACCTCCTCCCCATCGCTTTCCCTCTCCGATCACTCAAGTCCCTCCCGTTCGGCGCCAAGATAGCCACTCTGCTCGACGGCCACTCTCTCACCGTCACCACTCTTCCGGCCGACCGCCTCGTCTCGCTCAACAACGTCACCGTCACGGCGGCCCCAATTTTCGACGACGGGTCATTGATCGTCTTCGGAACCAGCGGATTCTTCGACCGGTATTTCCGGATCTCGGGTCCGATTGGGAGCTACAGCCCCAAGAATCTCGGCTGCTTGGCGCCTCGAAACCCTAACAGAGCGATGGCGGTGGAAACGGCGGCGTATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAGATCGAAAGGCTGCTCTGTCATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTGGCTCCCGTTGACCAAGTCATGGTGAAGCGGATCGGAAATCTGAGCGAGTACTCGTCGATCTTGCGCCGCCATGTGGTCCCCTGCCGGCTTTCTTGGAGCGATTTGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATTTGCAAGGGTTTATGATCAATGTGAGTCGATACGACACCGTTTTTGTGCTCAATGGGGTCCCGGTGATTATGCCGGAGCTGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAACTTCCAGTGAGCCTAACTCAGAGCCCAATTCAGAGTCAAACGGAGCCAGTGGTGGATACGGTCGATCCGGTGGCTTCTTCACCTCCCTCTCCGGCACTTCATCGCAGTTCCGGTGAGGTTCTTTGTTTGCAGGCCTTCACTATCTTGGTACCTTTTCTGTTTTTTCTACGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

334

Amino Acids

36.57

Weight (kDa)

7.75

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 163 - 275 8.1e-09 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 976
AccB1I GGYRCC 3 cut(s) 179, 394, 976
AccB7I CCANNNNNTGG 1 cut(s) 577
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 9 cut(s) 81, 121, 241, 275, 321, 422, 434, 586, 625
AclWI GGATC 3 cut(s) 353, 596, 887
AcoI YGGCCR 4 cut(s) 72, 97, 205, 234
AcyI GRCGYC 2 cut(s) 180, 395
AfaI GTAC 3 cut(s) 536, 608, 978
AfiI CCNNNNNNNGG 3 cut(s) 349, 577, 631
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 509, 664, 827
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 2 cut(s) 366, 778
AluI AGCT 2 cut(s) 366, 778
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 3 cut(s) 353, 596, 887
Ama87I CYCGRG 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 6 cut(s) 72, 97, 205, 234, 276, 960
ApeKI GCWGC 2 cut(s) 387, 483
ArsI GACNNNNNNTTYG 4 cut(s) 68, 100, 725, 757
AsiGI ACCGGT 1 cut(s) 333
Asp718I GGTACC 1 cut(s) 976
AspLEI GCGC 3 cut(s) 182, 397, 624
AspS9I GGNCC 4 cut(s) 277, 353, 634, 757
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 9 cut(s) 28, 49, 208, 214, 256, 592, 775, 900, 953
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 3 cut(s) 353, 634, 757
BanI GGYRCC 3 cut(s) 179, 394, 976
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 55, 301
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 2 cut(s) 374, 470
BccI CCATC 4 cut(s) 41, 146, 412, 671
BceAI ACGGC 4 cut(s) 220, 288, 447, 805
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 367
BfoI RGCGCY 2 cut(s) 183, 398
BfuI GTATCC 1 cut(s) 877
BisI GCNGC 5 cut(s) 276, 388, 435, 484, 625
BlsI GCNGC 5 cut(s) 277, 389, 436, 485, 626
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 1 cut(s) 761
Bme18I GGWCC 3 cut(s) 353, 634, 757
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 4 cut(s) 277, 353, 634, 757
BmrFI CCNGG 1 cut(s) 761
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 55, 301
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpuEI CTTGAG 3 cut(s) 146, 515, 692
BpuMI CCSGG 1 cut(s) 761
BsaHI GRCGYC 2 cut(s) 180, 395
BsaJI CCNNGG 1 cut(s) 520
BsaWI WCCGGW 4 cut(s) 333, 342, 895, 938
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 577, 631
Bse118I RCCGGY 2 cut(s) 333, 642
Bse1I ACTGG 3 cut(s) 43, 833, 875
BseAI TCCGGA 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 3 cut(s) 349, 577, 631
BseMII CTCAG 3 cut(s) 461, 590, 860
BseNI ACTGG 3 cut(s) 43, 833, 875
BseRI GAGGAG 2 cut(s) 107, 122
BseX3I CGGCCG 2 cut(s) 72, 234
BseXI GCAGC 2 cut(s) 374, 470
Bsh1285I CGRYCG 5 cut(s) 75, 237, 241, 334, 891
BshFI GGCC 6 cut(s) 74, 99, 207, 236, 278, 962
BshNI GGYRCC 3 cut(s) 179, 394, 976
BshTI ACCGGT 1 cut(s) 333
BsiEI CGRYCG 5 cut(s) 75, 237, 241, 334, 891
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 349
BslFI GGGAC 4 cut(s) 151, 620, 694, 743
BslI CCNNNNNNNGG 3 cut(s) 349, 577, 631
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 4 cut(s) 151, 620, 694, 743
BsnI GGCC 6 cut(s) 74, 99, 207, 236, 278, 962
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 750, 854
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 9 cut(s) 81, 121, 241, 275, 321, 422, 434, 586, 625
BspANI GGCC 6 cut(s) 74, 99, 207, 236, 278, 962
BspCNI CTCAG 3 cut(s) 462, 591, 859
BspEI TCCGGA 1 cut(s) 342
BspPI GGATC 3 cut(s) 353, 596, 887
BspT107I GGYRCC 3 cut(s) 179, 394, 976
BsrFI RCCGGY 2 cut(s) 333, 642
BsrI ACTGG 3 cut(s) 43, 833, 875
BssAI RCCGGY 2 cut(s) 333, 642
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
BssNI GRCGYC 2 cut(s) 180, 395
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 7 cut(s) 61, 220, 268, 553, 685, 739, 889
Bst6I CTCTTC 2 cut(s) 234, 659
BstACI GRCGYC 2 cut(s) 180, 395
BstC8I GCNNGC 4 cut(s) 460, 644, 794, 960
BstDEI CTNAG 3 cut(s) 470, 599, 846
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 1 cut(s) 682
BstH2I RGCGCY 2 cut(s) 183, 398
BstHHI GCGC 3 cut(s) 182, 397, 624
BstKTI GATC 8 cut(s) 158, 306, 348, 476, 591, 618, 717, 895
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
BstMCI CGRYCG 5 cut(s) 75, 237, 241, 334, 891
BstMWI GCNNNNNNNGC 2 cut(s) 80, 188
BstSCI CCNGG 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 374, 470
BstV2I GAAGAC 2 cut(s) 55, 301
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BstZI CGGCCG 2 cut(s) 72, 234
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 6 cut(s) 74, 99, 207, 236, 278, 962
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 3 cut(s) 124, 431, 914
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 4 cut(s) 457, 820, 840, 882
Cac8I GCNNGC 4 cut(s) 460, 644, 794, 960
CfoI GCGC 3 cut(s) 182, 397, 624
Cfr10I RCCGGY 2 cut(s) 333, 642
Cfr13I GGNCC 4 cut(s) 277, 353, 634, 757
Csp6I GTAC 3 cut(s) 535, 607, 977
CspAI ACCGGT 1 cut(s) 333
CviAII CATG 5 cut(s) 493, 521, 544, 577, 629
CviQI GTAC 3 cut(s) 535, 607, 977
DdeI CTNAG 3 cut(s) 470, 599, 846
DinI GGCGCC 2 cut(s) 181, 396
DpnI GATC 8 cut(s) 157, 305, 347, 475, 590, 617, 716, 894
DpnII GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
DrdI GACNNNNNNGTC 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 4 cut(s) 72, 97, 205, 234
EagI CGGCCG 2 cut(s) 72, 234
Eam1104I CTCTTC 2 cut(s) 234, 659
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 234, 659
EclXI CGGCCG 2 cut(s) 72, 234
Eco130I CCWWGG 1 cut(s) 520
Eco147I AGGCCT 1 cut(s) 962
Eco24I GRGCYC 1 cut(s) 854
Eco47I GGWCC 3 cut(s) 353, 634, 757
Eco52I CGGCCG 2 cut(s) 72, 234
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 854
EgeI GGCGCC 2 cut(s) 181, 396
EheI GGCGCC 2 cut(s) 181, 396
ErhI CCWWGG 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 5 cut(s) 496, 524, 547, 580, 632
FaiI YATR 7 cut(s) 494, 522, 545, 578, 630, 713, 770
FaqI GGGAC 4 cut(s) 151, 620, 694, 743
FatI CATG 5 cut(s) 492, 520, 543, 576, 628
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 5 cut(s) 276, 388, 435, 484, 625
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 5 cut(s) 276, 388, 435, 484, 625
GlaI GCGC 3 cut(s) 181, 396, 623
GluI GCNGC 5 cut(s) 276, 388, 435, 484, 625
HaeII RGCGCY 2 cut(s) 183, 398
HaeIII GGCC 6 cut(s) 74, 99, 207, 236, 278, 962
HhaI GCGC 3 cut(s) 182, 397, 624
Hin1I GRCGYC 2 cut(s) 180, 395
Hin1II CATG 5 cut(s) 496, 524, 547, 580, 632
Hin6I GCGC 3 cut(s) 180, 395, 622
HinP1I GCGC 3 cut(s) 180, 395, 622
HincII GTYRAC 2 cut(s) 549, 568
HindII GTYRAC 2 cut(s) 549, 568
HinfI GANTC 6 cut(s) 324, 379, 667, 724, 810, 862
HphI GGTGA 9 cut(s) 28, 49, 208, 214, 256, 592, 775, 900, 953
Hpy166II GTNNAC 3 cut(s) 549, 568, 805
Hpy188I TCNGA 7 cut(s) 155, 314, 357, 593, 600, 849, 861
Hpy188III TCNNGA 4 cut(s) 343, 506, 671, 824
Hpy8I GTNNAC 3 cut(s) 549, 568, 805
Hpy99I CGWCG 5 cut(s) 55, 206, 293, 296, 616
HpyAV CCTTC 2 cut(s) 94, 973
HpyCH4III ACNGT 7 cut(s) 61, 220, 268, 553, 685, 739, 889
HpyCH4IV ACGT 2 cut(s) 261, 997
HpyCH4V TGCA 3 cut(s) 514, 703, 958
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 188
HpyF3I CTNAG 3 cut(s) 470, 599, 846
HpySE526I ACGT 2 cut(s) 261, 997
Hsp92I GRCGYC 2 cut(s) 180, 395
Hsp92II CATG 5 cut(s) 496, 524, 547, 580, 632
HspAI GCGC 3 cut(s) 180, 395, 622
KasI GGCGCC 2 cut(s) 179, 394
KflI GGGWCCC 1 cut(s) 757
Kpn2I TCCGGA 1 cut(s) 342
KpnI GGTACC 1 cut(s) 980
KroI GCCGGC 1 cut(s) 642
KroNI GCCGGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
LmnI GCTCC 6 cut(s) 73, 363, 565, 654, 775, 871
Lsp1109I GCAGC 2 cut(s) 374, 470
MaeII ACGT 2 cut(s) 261, 997
MaeIII GTNAC 3 cut(s) 220, 262, 268
MalI GATC 8 cut(s) 157, 305, 347, 475, 590, 617, 716, 894
MboI GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
MboII GAAGA 6 cut(s) 55, 221, 301, 319, 676, 897
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 750, 854
MluCI AATT 4 cut(s) 282, 515, 697, 855
Mly113I GGCGCC 2 cut(s) 180, 395
MlyI GAGTC 3 cut(s) 676, 733, 871
MroI TCCGGA 1 cut(s) 342
MroNI GCCGGC 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 761
MwoI GCNNNNNNNGC 2 cut(s) 80, 188
NaeI GCCGGC 1 cut(s) 644
NarI GGCGCC 2 cut(s) 180, 395
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 520
NdeII GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
NgoMIV GCCGGC 1 cut(s) 642
NlaIII CATG 5 cut(s) 496, 524, 547, 580, 632
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 3 cut(s) 220, 262, 268
PceI AGGCCT 1 cut(s) 962
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 644
PfeI GAWTC 3 cut(s) 324, 379, 810
PflFI GACNNNGTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 5 cut(s) 277, 389, 436, 485, 626
PleI GAGTC 3 cut(s) 675, 732, 870
PluTI GGCGCC 2 cut(s) 183, 398
PpsI GAGTC 3 cut(s) 675, 732, 870
PpuMI RGGWCCY 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 757
PspPI GGNCC 4 cut(s) 277, 353, 634, 757
PspPPI RGGWCCY 1 cut(s) 757
PsrI GAACNNNNNNTAC 2 cut(s) 431, 463
PsuI RGATCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 3 cut(s) 536, 608, 978
RsaNI GTAC 3 cut(s) 535, 607, 977
SatI GCNGC 5 cut(s) 276, 388, 435, 484, 625
Sau3AI GATC 8 cut(s) 155, 303, 345, 473, 588, 615, 714, 892
Sau96I GGNCC 4 cut(s) 277, 353, 634, 757
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 3 cut(s) 676, 733, 871
ScrFI CCNGG 1 cut(s) 761
SduI GDGCHC 2 cut(s) 750, 854
SfcI CTRYAG 1 cut(s) 367
SfoI GGCGCC 2 cut(s) 181, 396
SinI GGWCC 3 cut(s) 353, 634, 757
SmlI CTYRAG 3 cut(s) 161, 530, 671
SmoI CTYRAG 3 cut(s) 161, 530, 671
Sse9I AATT 4 cut(s) 282, 515, 697, 855
SseBI AGGCCT 1 cut(s) 962
SsiI CCGC 9 cut(s) 81, 121, 241, 275, 321, 422, 434, 586, 625
SspDI GGCGCC 2 cut(s) 179, 394
StuI AGGCCT 1 cut(s) 962
StyD4I CCNGG 1 cut(s) 759
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 7 cut(s) 61, 220, 268, 553, 685, 739, 889
TaiI ACGT 2 cut(s) 264, 1000
TaqI TCGA 9 cut(s) 15, 201, 288, 330, 400, 476, 614, 727, 891
TasI AATT 4 cut(s) 282, 515, 697, 855
TatI WGTACW 1 cut(s) 606
TauI GCSGC 3 cut(s) 278, 437, 627
TfiI GAWTC 3 cut(s) 324, 379, 810
TscAI CASTG 4 cut(s) 457, 820, 840, 882
TseFI GTSAC 3 cut(s) 220, 262, 268
TseI GCWGC 2 cut(s) 387, 483
Tsp45I GTSAC 3 cut(s) 220, 262, 268
TspDTI ATGAA 1 cut(s) 917
TspGWI ACGGA 3 cut(s) 39, 822, 884
TspRI CASTG 4 cut(s) 457, 820, 840, 882
Tth111I GACNNNGTC 1 cut(s) 572
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 353, 634, 757
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.