Prupe.3G306500_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000614
Physical Location & Seq
Reverse (-)
26800110 .. 26801186
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G306500.1

Sequence Viewer

Length: 1077 bp
ATGGCGGCCTCGTCTCTCTTGATCCTTCTCATTACTCTCCTTTCGCTCTCTGCTTCTCCGGCTCTTGCTACCTCCGTAACCCTGTTGAAAGCAGCCAAGGTCCTCTCCAACTCTGGCTTCCTTTCCATGGCGCTAAAGCTTCAACTTGTCTCCCATTCCCTCGAATTTGAATCTCCCACCGCCACCATTTTCGCTCCTCCAGACCTCGCCTTCATTCGCTTGGGGCAACCCTCTCTCCCTCTTCTTCTCTACCACGTCTCCCCAAGAAGACTCTCCCTCAACACCCTCAAGTATCTTCGTCCCAACACCAAAATCCCAACTCTGCTCCCCAATTACACCTTGACCCTCACTGGGTCTCCAAATTTCCAAGGCTATTTGTCCATCAACAACCTCACGATTGATCCAAACGCTGTTCTGGATGATGGGTCGGTCGTCATTTACGGAATTGATGAGTTCTTCAATTCGTCGTTCTTGGTCGATGCCTCTTCAACACCGGCTCCGCCATTGATGAGCTCTGTTTCAGGTGCTCAATCACCAAGCCCTGGTCCCAGTGCTAATGAAGATACGGAGTTCGAATCGCGCCGGCCTGGTCCTGAATCTTTCCGTTTCGTTGCGGATTTGCTGAGGTCTAAAGGGTATTCAATCATGGCCGCATTTCTTGATGCGCAGTTGGTGTCGTTCAAAAGGAAGACCAGGCTGACAATCTTCGCTCCGGTCGATGAGGCCATTGAAGATTACCAGAGGAACACCACCGATTACTCTTTGATCTTCCGGCAGCACGTCGTTCCAAGAATGCTTTTGTGGCAAGATTTGGTGGGGCTTGATGATGGGACCATGCTGCCAACTTTTGAAGAAGGGTTCATGATCAATGTGATCAAGTTTGGTGAAGTTCCGGCGCTTAATGAAGTTGCAGTGGTGTCTGAAGATATGTATCAGAATCGGTGGCTTGTTGTGCATGGCCTCAATCGGTTGCTGACATCGCAGGAGCCTAAGCAACAAGACCCAGTTGATGATATTTACACTGATGCATATGTTGCTCAGAGCGTGCCTCATCATGATTATGGTGACTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

359

Amino Acids

39.51

Weight (kDa)

4.99

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 666
AccB7I CCANNNNNTGG 1 cut(s) 542
AccII CGCG 1 cut(s) 580
AciI CCGC 5 cut(s) 5, 180, 500, 614, 651
AclWI GGATC 2 cut(s) 16, 395
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 2 cut(s) 164, 361
AcuI CTGAAG 1 cut(s) 942
AfiI CCNNNNNNNGG 3 cut(s) 127, 351, 542
AgsI TTSAA 9 cut(s) 88, 143, 170, 460, 489, 642, 682, 731, 851
AjiI CACGTC 2 cut(s) 256, 781
AjnI CCWGG 3 cut(s) 541, 586, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 2 cut(s) 139, 513
AluI AGCT 2 cut(s) 139, 513
Alw21I GWGCWC 2 cut(s) 515, 529
Alw26I GTCTC 4 cut(s) 18, 154, 262, 360
AlwI GGATC 2 cut(s) 16, 395
AoxI GGCC 5 cut(s) 6, 584, 648, 723, 958
ApeKI GCWGC 3 cut(s) 92, 775, 838
ApoI RAATTY 2 cut(s) 164, 361
AspLEI GCGC 4 cut(s) 133, 582, 667, 898
AspS9I GGNCC 4 cut(s) 100, 545, 590, 831
AsuHPI GGTGA 3 cut(s) 525, 896, 1076
AsuII TTCGAA 1 cut(s) 573
AvaII GGWCC 4 cut(s) 100, 545, 590, 831
BanII GRGCYC 1 cut(s) 515
BbsI GAAGAC 2 cut(s) 274, 695
Bbv12I GWGCWC 2 cut(s) 515, 529
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 3 cut(s) 104, 787, 825
BccI CCATC 3 cut(s) 389, 416, 821
BciT130I CCWGG 3 cut(s) 543, 588, 694
BclI TGATCA 2 cut(s) 864, 873
BcoDI GTCTC 4 cut(s) 18, 154, 262, 360
BfoI RGCGCY 2 cut(s) 134, 899
BisI GCNGC 5 cut(s) 6, 93, 651, 776, 839
BlsI GCNGC 5 cut(s) 7, 94, 652, 777, 840
Bme1390I CCNGG 3 cut(s) 543, 588, 694
Bme18I GGWCC 4 cut(s) 100, 545, 590, 831
BmgBI CACGTC 2 cut(s) 256, 781
BmgT120I GGNCC 4 cut(s) 100, 545, 590, 831
BmiI GGNNCC 4 cut(s) 498, 547, 832, 987
BmrFI CCNGG 3 cut(s) 543, 588, 694
BmrI ACTGGG 3 cut(s) 360, 543, 998
BmsI GCATC 3 cut(s) 469, 652, 1015
BmuI ACTGGG 3 cut(s) 360, 543, 998
BpiI GAAGAC 2 cut(s) 274, 695
BplI GAGNNNNNCTC 2 cut(s) 1033, 1065
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 623, 990
Bpu14I TTCGAA 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 930
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 96, 126, 367, 541
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 8 cut(s) 219, 242, 249, 272, 340, 370, 481, 511
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 351, 542
Bse118I RCCGGY 2 cut(s) 493, 582
Bse1I ACTGG 3 cut(s) 355, 549, 1004
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 3 cut(s) 543, 588, 694
BseDI CCNNGG 4 cut(s) 96, 126, 367, 541
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 3 cut(s) 127, 351, 542
BseMII CTCAG 2 cut(s) 614, 1052
BseNI ACTGG 3 cut(s) 355, 549, 1004
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 104, 787, 825
Bsh1236I CGCG 1 cut(s) 580
Bsh1285I CGRYCG 2 cut(s) 432, 717
BshFI GGCC 5 cut(s) 8, 586, 650, 725, 960
BsiEI CGRYCG 2 cut(s) 432, 717
BsiHKAI GWGCWC 2 cut(s) 515, 529
BsiSI CCGG 6 cut(s) 59, 494, 583, 713, 772, 893
BslFI GGGAC 3 cut(s) 285, 531, 844
BslI CCNNNNNNNGG 3 cut(s) 127, 351, 542
BsmAI GTCTC 4 cut(s) 18, 154, 262, 360
BsmBI CGTCTC 2 cut(s) 18, 262
BsmFI GGGAC 3 cut(s) 285, 531, 844
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 5 cut(s) 8, 586, 650, 725, 960
Bso31I GGTCTC 1 cut(s) 360
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 515, 529
Bsp143I GATC 5 cut(s) 21, 400, 765, 864, 873
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 5 cut(s) 5, 180, 500, 614, 651
BspANI GGCC 5 cut(s) 8, 586, 650, 725, 960
BspCNI CTCAG 2 cut(s) 615, 1051
BspFNI CGCG 1 cut(s) 580
BspHI TCATGA 2 cut(s) 861, 1054
BspLI GGNNCC 4 cut(s) 498, 547, 832, 987
BspPI GGATC 2 cut(s) 16, 395
BspT104I TTCGAA 1 cut(s) 573
BspTNI GGTCTC 1 cut(s) 360
BsrFI RCCGGY 2 cut(s) 493, 582
BsrI ACTGG 3 cut(s) 355, 549, 1004
BssAI RCCGGY 2 cut(s) 493, 582
BssECI CCNNGG 4 cut(s) 96, 126, 367, 541
BssMI GATC 5 cut(s) 21, 400, 765, 864, 873
BssT1I CCWWGG 3 cut(s) 96, 126, 367
Bst2UI CCWGG 3 cut(s) 543, 588, 694
Bst6I CTCTTC 2 cut(s) 246, 490
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 584, 1046
BstDEI CTNAG 3 cut(s) 623, 990, 1038
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 580
BstH2I RGCGCY 2 cut(s) 134, 899
BstHHI GCGC 4 cut(s) 133, 582, 667, 898
BstKTI GATC 5 cut(s) 24, 403, 768, 867, 876
BstMAI GTCTC 4 cut(s) 18, 154, 262, 360
BstMBI GATC 5 cut(s) 21, 400, 765, 864, 873
BstMCI CGRYCG 2 cut(s) 432, 717
BstMWI GCNNNNNNNGC 5 cut(s) 59, 802, 952, 979, 1034
BstNI CCWGG 3 cut(s) 543, 588, 694
BstSCI CCNGG 3 cut(s) 541, 586, 692
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 3 cut(s) 104, 787, 825
BstV2I GAAGAC 2 cut(s) 274, 695
BsuRI GGCC 5 cut(s) 8, 586, 650, 725, 960
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 963
BtrI CACGTC 2 cut(s) 256, 781
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 5 cut(s) 348, 556, 918, 1020, 1072
Cac8I GCNNGC 2 cut(s) 584, 1046
CciI TCATGA 2 cut(s) 861, 1054
CfoI GCGC 4 cut(s) 133, 582, 667, 898
Cfr10I RCCGGY 2 cut(s) 493, 582
Cfr13I GGNCC 4 cut(s) 100, 545, 590, 831
CviAII CATG 6 cut(s) 127, 646, 835, 862, 956, 1055
DdeI CTNAG 3 cut(s) 623, 990, 1038
DpnI GATC 5 cut(s) 23, 402, 767, 866, 875
DpnII GATC 5 cut(s) 21, 400, 765, 864, 873
EaeI YGGCCR 1 cut(s) 648
Eam1104I CTCTTC 2 cut(s) 246, 490
EarI CTCTTC 2 cut(s) 246, 490
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 3 cut(s) 96, 126, 367
Eco24I GRGCYC 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 4 cut(s) 100, 545, 590, 831
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 942
EcoICRI GAGCTC 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 541, 586, 692
EcoT14I CCWWGG 3 cut(s) 96, 126, 367
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 515
ErhI CCWWGG 3 cut(s) 96, 126, 367
Esp3I CGTCTC 2 cut(s) 18, 262
FaeI CATG 6 cut(s) 130, 649, 838, 865, 959, 1058
FaqI GGGAC 3 cut(s) 285, 531, 844
FatI CATG 6 cut(s) 126, 645, 834, 861, 955, 1054
FauNDI CATATG 1 cut(s) 1030
FbaI TGATCA 2 cut(s) 864, 873
Fnu4HI GCNGC 5 cut(s) 6, 93, 651, 776, 839
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 5 cut(s) 6, 93, 651, 776, 839
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 4 cut(s) 132, 581, 666, 897
GluI GCNGC 5 cut(s) 6, 93, 651, 776, 839
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 2 cut(s) 134, 899
HaeIII GGCC 5 cut(s) 8, 586, 650, 725, 960
HapII CCGG 6 cut(s) 59, 494, 583, 713, 772, 893
HhaI GCGC 4 cut(s) 133, 582, 667, 898
Hin1II CATG 6 cut(s) 130, 649, 838, 865, 959, 1058
Hin6I GCGC 4 cut(s) 131, 580, 665, 896
HinP1I GCGC 4 cut(s) 131, 580, 665, 896
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 5 cut(s) 170, 270, 575, 596, 937
HpaII CCGG 6 cut(s) 59, 494, 583, 713, 772, 893
HphI GGTGA 3 cut(s) 525, 896, 1076
Hpy188I TCNGA 3 cut(s) 922, 936, 1041
Hpy188III TCNNGA 8 cut(s) 19, 200, 394, 416, 593, 659, 862, 1055
Hpy99I CGWCG 2 cut(s) 469, 785
HpyAV CCTTC 3 cut(s) 35, 220, 848
HpyCH4IV ACGT 2 cut(s) 255, 780
HpyCH4V TGCA 3 cut(s) 911, 955, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 802, 952, 979, 1034
HpyF3I CTNAG 3 cut(s) 623, 990, 1038
HpySE526I ACGT 2 cut(s) 255, 780
Hsp92II CATG 6 cut(s) 130, 649, 838, 865, 959, 1058
HspAI GCGC 4 cut(s) 131, 580, 665, 896
KroI GCCGGC 1 cut(s) 582
KroNI GCCGGC 1 cut(s) 584
Ksp22I TGATCA 2 cut(s) 864, 873
Kzo9I GATC 5 cut(s) 21, 400, 765, 864, 873
LmnI GCTCC 5 cut(s) 199, 330, 502, 715, 985
Lsp1109I GCAGC 3 cut(s) 104, 787, 825
LweI GCATC 3 cut(s) 469, 652, 1015
MaeII ACGT 2 cut(s) 255, 780
MaeIII GTNAC 2 cut(s) 76, 1064
MalI GATC 5 cut(s) 23, 402, 767, 866, 875
MboI GATC 5 cut(s) 21, 400, 765, 864, 873
MhlI GDGCHC 2 cut(s) 515, 529
MluCI AATT 5 cut(s) 164, 331, 361, 444, 460
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 1030
MroNI GCCGGC 1 cut(s) 582
MseI TTAA 1 cut(s) 900
MslI CAYNNNNRTG 1 cut(s) 1059
MspI CCGG 6 cut(s) 59, 494, 583, 713, 772, 893
MspR9I CCNGG 3 cut(s) 543, 588, 694
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 3 cut(s) 543, 588, 694
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 5 cut(s) 59, 802, 952, 979, 1034
NaeI GCCGGC 1 cut(s) 584
NcoI CCATGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 1030
NdeII GATC 5 cut(s) 21, 400, 765, 864, 873
NgoMIV GCCGGC 1 cut(s) 582
NlaIII CATG 6 cut(s) 130, 649, 838, 865, 959, 1058
NlaIV GGNNCC 4 cut(s) 498, 547, 832, 987
NmuCI GTSAC 1 cut(s) 1064
NsbI TGCGCA 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 1030
NspV TTCGAA 1 cut(s) 573
PagI TCATGA 2 cut(s) 861, 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PctI GAATGC 1 cut(s) 798
PdiI GCCGGC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 170, 575, 596, 937
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 5 cut(s) 7, 94, 652, 777, 840
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 541, 586, 692
PspGI CCWGG 3 cut(s) 541, 586, 692
PspN4I GGNNCC 4 cut(s) 498, 547, 832, 987
PspPI GGNCC 4 cut(s) 100, 545, 590, 831
PspPPI RGGWCCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 1059
SacI GAGCTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 900
SatI GCNGC 5 cut(s) 6, 93, 651, 776, 839
Sau3AI GATC 5 cut(s) 21, 400, 765, 864, 873
Sau96I GGNCC 4 cut(s) 100, 545, 590, 831
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 3 cut(s) 543, 588, 694
SduI GDGCHC 2 cut(s) 515, 529
SfaNI GCATC 3 cut(s) 469, 652, 1015
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 4 cut(s) 100, 545, 590, 831
SmiMI CAYNNNNRTG 1 cut(s) 1059
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 5 cut(s) 164, 331, 361, 444, 460
SsiI CCGC 5 cut(s) 5, 180, 500, 614, 651
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 541, 586, 692
StyI CCWWGG 3 cut(s) 96, 126, 367
TaiI ACGT 2 cut(s) 258, 783
TaqI TCGA 4 cut(s) 162, 477, 573, 717
TaqII GACCGA 1 cut(s) 418
TasI AATT 5 cut(s) 164, 331, 361, 444, 460
TauI GCSGC 2 cut(s) 8, 653
TfiI GAWTC 4 cut(s) 170, 575, 596, 937
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 4 cut(s) 355, 556, 918, 1027
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 3 cut(s) 92, 775, 838
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 4 cut(s) 202, 573, 850, 918
TspGWI ACGGA 4 cut(s) 64, 456, 581, 593
TspRI CASTG 4 cut(s) 355, 556, 918, 1027
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 4 cut(s) 100, 545, 590, 831
XapI RAATTY 2 cut(s) 164, 361
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.