Rh4CG053800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000614
Physical Location & Seq
Forward (+)
10769653 .. 10769990
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG053800.1

Sequence Viewer

Length: 312 bp
ATGATTGGGTTTAACCAGAATACGACGCTAATGGTTTTCATTGCCGTCAAAGACTACTCAAGGAACAGCTCCGATTACGAGGTGATTTTCAGGGAGCACGTGGTCCAGAAGCTGCTGCCGACTTTTGAAGAAGGTGAAGTCCCTGTGCTCAATGATGTTCCAGTGCCCGATGAGGACCTGTACCAGAGCTTCTTTCTAGTTGTTGATGGCCTCAATCGCTTGCTGACGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAGTTGATCAAGAAGATGGTAGCGCTGATTTCACTGATGGGTTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

103

Amino Acids

11.84

Weight (kDa)

4.05

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 230
AcvI CACGTG 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 3 cut(s) 69, 112, 189
AluI AGCT 3 cut(s) 69, 112, 189
Alw21I GWGCWC 2 cut(s) 99, 150
AlwNI CAGNNNCTG 1 cut(s) 112
Aor51HI AGCGCT 1 cut(s) 286
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 3 cut(s) 112, 115, 235
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 103, 175
AsuHPI GGTGA 3 cut(s) 94, 146, 256
AvaII GGWCC 2 cut(s) 103, 175
BaeGI GKGCMC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbrPI CACGTG 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 99, 150
BbvI GCAGC 3 cut(s) 99, 102, 247
BccI CCATC 3 cut(s) 200, 272, 293
BceAI ACGGC 1 cut(s) 29
BclI TGATCA 1 cut(s) 268
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 3 cut(s) 113, 116, 236
BlsI GCNGC 3 cut(s) 114, 117, 237
Bme18I GGWCC 2 cut(s) 103, 175
BmgT120I GGNCC 2 cut(s) 103, 175
BmrI ACTGGG 1 cut(s) 257
BmuI ACTGGG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 161, 263
Bse3DI GCAATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 161, 263
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 99, 102, 247
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 99, 150
BslFI GGGAC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 3 cut(s) 99, 150, 168
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 161, 263
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 99, 102, 247
BsuRI GGCC 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 168, 294
Cac8I GCNNGC 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 103, 175
CseI GACGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 4 cut(s) 69, 112, 189, 210
CviKI_1 RGCY 4 cut(s) 69, 112, 189, 210
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 103, 175
Eco47III AGCGCT 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 175
FaqI GGGAC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 113, 116, 236
Fsp4HI GCNGC 3 cut(s) 113, 116, 236
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 286
GluI GCNGC 3 cut(s) 113, 116, 236
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 210
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HphI GGTGA 3 cut(s) 94, 146, 256
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 106, 272
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 99, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpySE526I ACGT 2 cut(s) 99, 227
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 2 cut(s) 74, 94
LpnPI CCDG 8 cut(s) 29, 76, 119, 156, 174, 191, 197, 276
Lsp1109I GCAGC 3 cut(s) 99, 102, 247
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 99, 227
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 140, 287
MhlI GDGCHC 3 cut(s) 99, 150, 168
MnlI CCTC 4 cut(s) 73, 166, 221, 240
MseI TTAA 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 114, 117, 237
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspCI CACGTG 1 cut(s) 100
PspPI GGNCC 2 cut(s) 103, 175
PspPPI RGGWCCY 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 113, 116, 236
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 103, 175
SduI GDGCHC 3 cut(s) 99, 150, 168
SetI ASST 8 cut(s) 71, 84, 102, 114, 136, 180, 191, 230
SinI GGWCC 2 cut(s) 103, 175
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SspMI CTAG 1 cut(s) 197
TaiI ACGT 2 cut(s) 102, 230
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 168, 301
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 3 cut(s) 112, 115, 235
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 2 cut(s) 168, 301
VpaK11BI GGWCC 2 cut(s) 103, 175
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.