Rmu_sc0009386.1_g000004

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009386.1
OG0000614
Physical Location & Seq
Reverse (-)
16775 .. 17298
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009386.1_g000004.1.cds

Sequence Viewer

Length: 423 bp
atggggtcgatgatgatatacatcatcgatcggttctttaacttgtctttcttggagactgatgaagcttcggcgccggctccgattgctggagtttcgggtcagccacaccggccattcgggcccgttgcagatctgcttaggtctgaaggttgttctatcatggatacgtttcttgatgcccaaatgattgggtttaaccagaatatgacgctgatgtttattatcaatacgatcaagataggtgacatccctgtgctcaatgatgttccagtgcacgatgaggacctataccaaagcttctttctggtagttgatggcctcaatcgcttgctaacgtcacagcagcaaatggtgaggcaagaacaagacccagttgatcaagaagatggtagcgctgatttcactgatgggtttgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

140

Amino Acids

15.63

Weight (kDa)

4.05

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 74
AfeI AGCGCT 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 2 cut(s) 68, 300
AluI AGCT 2 cut(s) 68, 300
Alw21I GWGCWC 2 cut(s) 261, 279
Alw26I GTCTC 1 cut(s) 50
Alw44I GTGCAC 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 397
AoxI GGCC 3 cut(s) 113, 122, 319
ApaI GGGCCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 346
AspLEI GCGC 2 cut(s) 76, 398
AspS9I GGNCC 3 cut(s) 122, 123, 286
AsuHPI GGTGA 2 cut(s) 257, 367
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 2 cut(s) 126, 279
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 261, 279
BbvI GCAGC 1 cut(s) 358
BccI CCATC 3 cut(s) 311, 383, 404
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 77, 399
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 2 cut(s) 112, 121
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 122, 123, 286
BmiI GGNNCC 3 cut(s) 75, 81, 124
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 2 cut(s) 76, 111
Bse1I ACTGG 2 cut(s) 272, 374
Bse8I GATNNNNATC 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 272, 374
BseSI GKGCMC 2 cut(s) 126, 279
BseXI GCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 3 cut(s) 115, 124, 321
BshNI GGYRCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 261, 279
BsiSI CCGG 2 cut(s) 77, 112
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 3 cut(s) 115, 124, 321
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 126, 261, 279
Bsp143I GATC 4 cut(s) 28, 133, 234, 379
BspANI GGCC 3 cut(s) 115, 124, 321
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 75, 81, 124
BspT107I GGYRCC 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 76, 111
BsrI ACTGG 2 cut(s) 272, 374
BssAI RCCGGY 2 cut(s) 76, 111
BssMI GATC 4 cut(s) 28, 133, 234, 379
BssNI GRCGYC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 78, 332
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 249
BstH2I RGCGCY 2 cut(s) 77, 399
BstHHI GCGC 2 cut(s) 76, 398
BstKTI GATC 4 cut(s) 31, 136, 237, 382
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 28, 133, 234, 379
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 86, 112, 121, 327
BstSLI GKGCMC 2 cut(s) 126, 279
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 27
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 115, 124, 321
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 279, 405
Cac8I GCNNGC 2 cut(s) 78, 332
CfoI GCGC 2 cut(s) 76, 398
Cfr10I RCCGGY 2 cut(s) 76, 111
Cfr13I GGNCC 3 cut(s) 122, 123, 286
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 220
CviAII CATG 1 cut(s) 163
CviJI RGCY 7 cut(s) 68, 80, 106, 115, 124, 300, 321
CviKI_1 RGCY 7 cut(s) 68, 80, 106, 115, 124, 300, 321
DdeI CTNAG 1 cut(s) 140
DinI GGCGCC 1 cut(s) 75
DpnI GATC 4 cut(s) 30, 135, 236, 381
DpnII GATC 4 cut(s) 28, 133, 234, 379
EaeI YGGCCR 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 286
Eco47III AGCGCT 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
FaeI CATG 1 cut(s) 166
FaiI YATR 4 cut(s) 19, 164, 209, 292
FatI CATG 1 cut(s) 162
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 347
GlaI GCGC 2 cut(s) 75, 397
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 2 cut(s) 77, 399
HaeIII GGCC 3 cut(s) 115, 124, 321
HapII CCGG 2 cut(s) 77, 112
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 76, 398
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 74, 396
HinP1I GCGC 2 cut(s) 74, 396
HindIII AAGCTT 2 cut(s) 66, 298
HpaII CCGG 2 cut(s) 77, 112
HphI GGTGA 2 cut(s) 257, 367
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 84, 148
Hpy188III TCNNGA 3 cut(s) 176, 238, 383
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 170, 338
HpyCH4V TGCA 2 cut(s) 131, 277
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 112, 121, 327
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 170, 338
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 74, 396
KasI GGCGCC 1 cut(s) 73
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 28, 133, 234, 379
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 75, 90, 125, 215, 267, 285, 293, 387
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 169
MaeII ACGT 2 cut(s) 170, 338
MaeIII GTNAC 2 cut(s) 245, 339
MalI GATC 4 cut(s) 30, 135, 236, 381
MboI GATC 4 cut(s) 28, 133, 234, 379
MboII GAAGA 1 cut(s) 398
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 126, 261, 279
Mly113I GGCGCC 1 cut(s) 74
MnlI CCTC 3 cut(s) 277, 332, 351
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 2 cut(s) 39, 198
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 2 cut(s) 77, 112
MwoI GCNNNNNNNGC 4 cut(s) 86, 112, 121, 327
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 74
NdeII GATC 4 cut(s) 28, 133, 234, 379
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 3 cut(s) 75, 81, 124
NmuCI GTSAC 2 cut(s) 245, 339
PdiI GCCGGC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 348
Ple19I CGATCG 1 cut(s) 31
PluTI GGCGCC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 75, 81, 124
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 3 cut(s) 122, 123, 286
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 39, 198
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 4 cut(s) 28, 133, 234, 379
Sau96I GGNCC 3 cut(s) 122, 123, 286
SduI GDGCHC 3 cut(s) 126, 261, 279
SetI ASST 8 cut(s) 70, 146, 154, 173, 247, 291, 302, 341
SfaNI GCATC 1 cut(s) 169
SfiI GGCCNNNNNGGCC 1 cut(s) 121
SfoI GGCGCC 1 cut(s) 75
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 254
SspDI GGCGCC 1 cut(s) 73
TaiI ACGT 2 cut(s) 173, 341
TaqI TCGA 2 cut(s) 8, 27
Tru1I TTAA 2 cut(s) 39, 198
Tru9I TTAA 2 cut(s) 39, 198
TscAI CASTG 2 cut(s) 279, 412
TseFI GTSAC 2 cut(s) 245, 339
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 2 cut(s) 245, 339
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 2 cut(s) 279, 412
VneI GTGCAC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.