MD13G1026900.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000614
Physical Location & Seq
Forward (+)
1956516 .. 1957610
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1026900.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGACCGCCTCCAAGGTCCTCCTCTCTTTCCTCCTCCTCGCCCTCTCATTCTTCTCTCTCTCCTCCGCCCTCCACACCCAAACCCTCATCAACGCCGCCGAAATCCTCTCAGATTCTGGCTACACCTCCATGTCCCTGACGCTCGACCTCGCCTCCCGCACCCTCCTCAGTTCCCGCTCTCCTTCCCTCACCATCTTTGCCCCCAACGACGCCTCCTTCTCTCTTTCAGGCCAGCCGCCGCTGATCCTCCTCCAATACCACCTCCTACCCCTCCATTTCTCTCTCCGATCGCTAAAGTCCCTCCCTTTTGGCGCCAAGATAGCAACTTTACTCTCCGACCGCACTCTCACCGTCACCACTCTGCCGTCCGATCACCGCTTCTCGCTCAACAACGTCACCGTCACTGCTTCCCCAATTTTCGATGATGGGTCCCTGATAATTTTCGGAATTGACAGGTTCTTGGATCCGTATTTTCAGATTTCCGGTCCGATTCAGAGCTACACCCCCAAGAATCTCGGTTGCTTGGCCCCCAAGGAAAACCCAGATCAGACGATGGATCTCAGAGACGGCTACGTCCCCTTCAACGACGCCTCCGCCACCCTGAGATCCAAAGGGTGCTCTGTCATGGCGTCGTTTCTTGAACTGCAGTTTCATGGTTCTTTCTTCAAGTTCCAGACGATGCTGACTGTGTTTGCTCCGTTTGACCAAGTTCTGATGAACCGGGTCGGGAACCTGACCGAGTACTCCTCCATCTTCCACCGCCACGTGGTGCCCTGCCGGCTTTCTTGGAGTGATTTGGACAGCTTGAATGATGGGACGGTTCTGAGGACTAATCTGGTGGGGTTTTCGATGAATATCACCCGCTCCGATGACGTCTTGAAGCTCAACGGCGTGTCGGTTATCTTGCCGGAAGTTTACCACAATGGGTGGCTTATGGTGCACGGAATAAGTGAAGTTCTTGAGGTGCCAGAGAGAACTGAGGAAACAGATCGACCGGAACAAGTGACTGTGGCTTCACCTGAATTTGGTAACAGCTCCCCTGCGAATGAGAATACGATTGGTCACAGCCATTTTTTTACTTACAGGCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

365

Amino Acids

40.26

Weight (kDa)

5.7

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 56 - 156 2.3e-06 Fasciclin domain
Fasciclin PF02469 225 - 320 4.8e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AatII GACGTC 1 cut(s) 876
AccB1I GGYRCC 3 cut(s) 311, 769, 964
AccBSI CCGCTC 2 cut(s) 177, 864
AclWI GGATC 5 cut(s) 238, 458, 471, 564, 600
AcsI RAATTY 1 cut(s) 1022
AcvI CACGTG 1 cut(s) 766
AcyI GRCGYC 5 cut(s) 210, 312, 588, 629, 873
AdeI CACNNNGTG 1 cut(s) 769
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 766, 1025
AgsI TTSAA 5 cut(s) 583, 641, 667, 808, 880
AluBI AGCT 4 cut(s) 498, 804, 883, 1035
AluI AGCT 4 cut(s) 498, 804, 883, 1035
Alw21I GWGCWC 2 cut(s) 620, 942
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 938
AlwI GGATC 5 cut(s) 238, 458, 471, 564, 600
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 229, 525
ApaLI GTGCAC 1 cut(s) 938
ApoI RAATTY 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 4 cut(s) 16, 429, 485, 526
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 7 cut(s) 181, 340, 346, 365, 388, 850, 1008
AvaII GGWCC 3 cut(s) 16, 429, 485
BaeGI GKGCMC 2 cut(s) 774, 942
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 3 cut(s) 311, 769, 964
BbrPI CACGTG 1 cut(s) 766
Bbv12I GWGCWC 2 cut(s) 620, 942
BccI CCATC 5 cut(s) 200, 419, 547, 758, 806
BceAI ACGGC 3 cut(s) 349, 583, 904
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 644
BfoI RGCGCY 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 3 cut(s) 96, 236, 239
BlsI GCNGC 3 cut(s) 97, 237, 240
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 3 cut(s) 16, 429, 485
BmgT120I GGNCC 4 cut(s) 16, 429, 485, 526
BmiI GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpuEI CTTGAG 1 cut(s) 980
BpuMI CCSGG 1 cut(s) 722
BsaAI YACGTR 1 cut(s) 766
BsaBI GATNNNNATC 1 cut(s) 854
BsaHI GRCGYC 5 cut(s) 210, 312, 588, 629, 873
BsaJI CCNNGG 2 cut(s) 12, 531
BsaWI WCCGGW 2 cut(s) 482, 994
BsaXI ACNNNNNCTCC 6 cut(s) 137, 167, 197, 227, 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 1025
Bse118I RCCGGY 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 854
BseDI CCNNGG 2 cut(s) 12, 531
BseGI GGATG 1 cut(s) 1087
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 766, 1025
BseMII CTCAG 6 cut(s) 123, 181, 574, 593, 815, 969
BseRI GAGGAG 7 cut(s) 11, 23, 26, 52, 155, 239, 736
BseSI GKGCMC 2 cut(s) 774, 942
Bsh1285I CGRYCG 3 cut(s) 290, 340, 995
BshFI GGCC 2 cut(s) 231, 527
BshNI GGYRCC 3 cut(s) 311, 769, 964
BsiEI CGRYCG 3 cut(s) 290, 340, 995
BsiHKAI GWGCWC 2 cut(s) 620, 942
BsiSI CCGG 5 cut(s) 483, 721, 778, 908, 995
BslFI GGGAC 5 cut(s) 118, 283, 415, 560, 829
BslI CCNNNNNNNGG 2 cut(s) 766, 1025
BsmAI GTCTC 1 cut(s) 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 5 cut(s) 118, 283, 415, 560, 829
BsnI GGCC 2 cut(s) 231, 527
Bsp1286I GDGCHC 3 cut(s) 620, 774, 942
Bsp143I GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
BspANI GGCC 2 cut(s) 231, 527
BspCNI CTCAG 6 cut(s) 122, 180, 573, 594, 816, 970
BspLI GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
BspMAI CTGCAG 1 cut(s) 648
BspPI GGATC 5 cut(s) 238, 458, 471, 564, 600
BspT107I GGYRCC 3 cut(s) 311, 769, 964
BsrBI CCGCTC 2 cut(s) 177, 864
BsrFI RCCGGY 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 12, 531
BssMI GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
BssNI GRCGYC 5 cut(s) 210, 312, 588, 629, 873
BssT1I CCWWGG 2 cut(s) 12, 531
Bst4CI ACNGT 5 cut(s) 352, 400, 688, 820, 1009
BstACI GRCGYC 5 cut(s) 210, 312, 588, 629, 873
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 233, 779
BstDEI CTNAG 6 cut(s) 109, 167, 560, 602, 824, 978
BstF5I GGATG 1 cut(s) 1087
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 8 cut(s) 246, 290, 373, 466, 547, 559, 608, 991
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
BstMCI CGRYCG 3 cut(s) 290, 340, 995
BstMWI GCNNNNNNNGC 3 cut(s) 320, 778, 937
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 644
BstSLI GKGCMC 2 cut(s) 774, 942
BstX2I RGATCY 3 cut(s) 463, 556, 605
BstYI RGATCY 3 cut(s) 463, 556, 605
BsuRI GGCC 2 cut(s) 231, 527
BtsCI GGATG 1 cut(s) 1087
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 233, 779
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 4 cut(s) 16, 429, 485, 526
CpoI CGGWCCG 1 cut(s) 485
CseI GACGC 4 cut(s) 148, 218, 596, 618
Csp6I GTAC 1 cut(s) 742
CspI CGGWCCG 1 cut(s) 485
CviAII CATG 3 cut(s) 130, 625, 653
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 6 cut(s) 109, 167, 560, 602, 824, 978
DinI GGCGCC 1 cut(s) 313
DpnI GATC 8 cut(s) 245, 289, 372, 465, 546, 558, 607, 990
DpnII GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
DraIII CACNNNGTG 1 cut(s) 769
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EciI GGCGGA 2 cut(s) 55, 583
Eco130I CCWWGG 2 cut(s) 12, 531
Eco47I GGWCC 3 cut(s) 16, 429, 485
Eco72I CACGTG 1 cut(s) 766
EcoO109I RGGNCCY 2 cut(s) 16, 429
EcoT14I CCWWGG 2 cut(s) 12, 531
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 12, 531
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 3 cut(s) 133, 628, 656
FaiI YATR 5 cut(s) 131, 626, 654, 935, 1093
FaqI GGGAC 5 cut(s) 118, 283, 415, 560, 829
FatI CATG 3 cut(s) 129, 624, 652
FauI CCCGC 3 cut(s) 164, 182, 869
Fnu4HI GCNGC 3 cut(s) 96, 236, 239
FokI GGATG 1 cut(s) 1074
Fsp4HI GCNGC 3 cut(s) 96, 236, 239
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 96, 236, 239
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 231, 527
HapII CCGG 5 cut(s) 483, 721, 778, 908, 995
HgaI GACGC 4 cut(s) 148, 218, 596, 618
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 5 cut(s) 210, 312, 588, 629, 873
Hin1II CATG 3 cut(s) 133, 628, 656
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 3 cut(s) 113, 490, 511
HpaII CCGG 5 cut(s) 483, 721, 778, 908, 995
HphI GGTGA 7 cut(s) 181, 340, 346, 365, 388, 850, 1008
Hpy166II GTNNAC 2 cut(s) 916, 940
Hpy188III TCNNGA 5 cut(s) 638, 673, 727, 877, 959
Hpy8I GTNNAC 2 cut(s) 916, 940
Hpy99I CGWCG 3 cut(s) 212, 590, 634
HpyAV CCTTC 3 cut(s) 192, 226, 589
HpyCH4III ACNGT 5 cut(s) 352, 400, 688, 820, 1009
HpyCH4IV ACGT 4 cut(s) 393, 573, 765, 873
HpyCH4V TGCA 2 cut(s) 646, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 778, 937
HpyF3I CTNAG 6 cut(s) 109, 167, 560, 602, 824, 978
HpySE526I ACGT 4 cut(s) 393, 573, 765, 873
Hsp92I GRCGYC 5 cut(s) 210, 312, 588, 629, 873
Hsp92II CATG 3 cut(s) 133, 628, 656
HspAI GCGC 1 cut(s) 312
KasI GGCGCC 1 cut(s) 311
KflI GGGWCCC 1 cut(s) 429
KroI GCCGGC 1 cut(s) 777
KroNI GCCGGC 1 cut(s) 779
Kzo9I GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
LmnI GCTCC 3 cut(s) 700, 869, 1040
LweI GCATC 1 cut(s) 669
MaeII ACGT 4 cut(s) 393, 573, 765, 873
MaeIII GTNAC 6 cut(s) 352, 394, 400, 1003, 1028, 1061
MalI GATC 8 cut(s) 245, 289, 372, 465, 546, 558, 607, 990
MbiI CCGCTC 2 cut(s) 177, 864
MboI GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
MboII GAAGA 3 cut(s) 43, 655, 745
MflI RGATCY 3 cut(s) 463, 556, 605
MhlI GDGCHC 3 cut(s) 620, 774, 942
MluCI AATT 4 cut(s) 414, 438, 447, 1022
Mly113I GGCGCC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 360
MroNI GCCGGC 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 5 cut(s) 483, 721, 778, 908, 995
MspR9I CCNGG 1 cut(s) 722
MwoI GCNNNNNNNGC 3 cut(s) 320, 778, 937
NaeI GCCGGC 1 cut(s) 779
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 722
NdeII GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
NgoMIV GCCGGC 1 cut(s) 777
NlaIII CATG 3 cut(s) 133, 628, 656
NlaIV GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
NmuCI GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
PdiI GCCGGC 1 cut(s) 779
PfeI GAWTC 3 cut(s) 113, 490, 511
PkrI GCNGC 3 cut(s) 97, 237, 240
Ple19I CGATCG 1 cut(s) 290
PluTI GGCGCC 1 cut(s) 315
PmaCI CACGTG 1 cut(s) 766
PmlI CACGTG 1 cut(s) 766
Ppu21I YACGTR 1 cut(s) 766
PpuMI RGGWCCY 2 cut(s) 16, 429
Psp5II RGGWCCY 2 cut(s) 16, 429
PspCI CACGTG 1 cut(s) 766
PspN4I GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
PspPI GGNCC 4 cut(s) 16, 429, 485, 526
PspPPI RGGWCCY 2 cut(s) 16, 429
PstI CTGCAG 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 3 cut(s) 463, 556, 605
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 128
Rsr2I CGGWCCG 1 cut(s) 485
RsrII CGGWCCG 1 cut(s) 485
SatI GCNGC 3 cut(s) 96, 236, 239
Sau3AI GATC 8 cut(s) 243, 287, 370, 463, 544, 556, 605, 988
Sau96I GGNCC 4 cut(s) 16, 429, 485, 526
ScaI AGTACT 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 3 cut(s) 620, 774, 942
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 644
SfoI GGCGCC 1 cut(s) 313
SinI GGWCC 3 cut(s) 16, 429, 485
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 4 cut(s) 414, 438, 447, 1022
SspDI GGCGCC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 2 cut(s) 12, 531
TaaI ACNGT 5 cut(s) 352, 400, 688, 820, 1009
TaiI ACGT 4 cut(s) 396, 576, 768, 876
TaqI TCGA 4 cut(s) 144, 420, 848, 991
TaqII GACCGA 1 cut(s) 752
TasI AATT 4 cut(s) 414, 438, 447, 1022
TatI WGTACW 1 cut(s) 741
TauI GCSGC 3 cut(s) 98, 238, 241
TfiI GAWTC 3 cut(s) 113, 490, 511
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
Tsp45I GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
TspDTI ATGAA 3 cut(s) 641, 731, 866
TspGWI ACGGA 3 cut(s) 456, 687, 957
TspRI CASTG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 938
VpaK11BI GGWCC 3 cut(s) 16, 429, 485
XapI RAATTY 1 cut(s) 1022
ZraI GACGTC 1 cut(s) 874
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.