Rmu_sc0013970.1_g000002

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013970.1
Physical Location & Seq
Forward (+)
3749 .. 4895
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013970.1_g000002.1.cds

Sequence Viewer

Length: 1083 bp
atggccacctcgcttctcctctttctgattctcctctccctctcttcctccgccgtcgcttcctccgccaccctcctcctcaccgccgccaacaccctctccaactccggctacctctccatggccctcaccctccagctcgccgccagcgccggcctcaacttcgactctcccaccgccaccatcttcgctccgtcggacaccgccttcttccagtcgggcccaccctcgctgcctctgctccggtaccacatctcgccgcgacgattctcggtcaaaaccctaccctacctccaccgcggcaccaaaatccagactctgctcccgaattactcactcaccgtgacttcgtctccggccgtcgaaggctactcgtcggtcaacgacgttcgggtcgacccgaattcggttctggacgacgggtcggtgatcatatacgccgtcgatcggttctttaacttgactttcttggaggctgaagaagctccgatcgctggaatttcgggtcagcagcaccggccgttcgggtcggttgcggatctgctgaggtccaaaggctgttcgatcatggccgcgtttcttgacgcccagctgagcgccggctccgatcgctggaatttcgggtcaccggccgttcggctgatcgggttcaaccggaagacggcgctgacggtgttcgcagcggtcgacgacgccgtcgaagactacgcgaggaacagctccgattactcggagattttccggcagcacgtggtgccgaggctgctgacgtggcaagacctggtggcgcttgatgacgggacgatgctgccgacttttgaagaagggtttatgatccatgtgatcaagatgggtgacgtccctgtgctcaatgatgttccggtggccgatcaggacctctaccagagccgcttcctggttgttcatggcgtcaatcacttgctgacgtcacagaagcagatggtgaggcaagaagaagacccggttggagatcaagaagatggtggtgctggtttcactgatgggtttgttgccaatgttgctgatcagatcaaccctcaaggttttgatgactatcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

39.05

Weight (kDa)

4.68

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 392, 695
AatII GACGTC 2 cut(s) 861, 950
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 3 cut(s) 246, 302, 754
AccI GTMKAC 2 cut(s) 396, 687
AccII CGCG 4 cut(s) 262, 300, 575, 710
AclWI GGATC 2 cut(s) 546, 829
AcoI YGGCCR 6 cut(s) 3, 357, 518, 570, 630, 885
AcsI RAATTY 3 cut(s) 403, 498, 616
AcuI CTGAAG 1 cut(s) 498
AcvI CACGTG 1 cut(s) 751
AcyI GRCGYC 5 cut(s) 585, 693, 858, 930, 947
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 7 cut(s) 121, 406, 447, 494, 612, 661, 916
AgsI TTSAA 2 cut(s) 652, 821
AhdI GACNNNNNGTC 1 cut(s) 421
AjiI CACGTC 1 cut(s) 771
AjnI CCWGG 2 cut(s) 780, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AluBI AGCT 4 cut(s) 139, 485, 592, 720
AluI AGCT 4 cut(s) 139, 485, 592, 720
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 2 cut(s) 546, 829
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 9 cut(s) 3, 123, 154, 220, 357, 518, 570, 630, 885
ApaI GGGCCC 1 cut(s) 224
ApeKI GCWGC 6 cut(s) 232, 511, 680, 745, 763, 808
ApoI RAATTY 3 cut(s) 403, 498, 616
Asp718I GGTACC 1 cut(s) 246
AspLEI GCGC 4 cut(s) 152, 599, 667, 790
AspS9I GGNCC 5 cut(s) 124, 220, 221, 549, 895
AsuC2I CCSGG 1 cut(s) 983
AsuHPI GGTGA 7 cut(s) 73, 121, 331, 439, 618, 866, 976
AvaII GGWCC 2 cut(s) 549, 895
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 246, 302, 754
BanII GRGCYC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 751
BbsI GAAGAC 3 cut(s) 665, 708, 984
Bbv12I GWGCWC 1 cut(s) 870
BbvCI CCTCAGC 1 cut(s) 545
BbvI GCAGC 6 cut(s) 219, 523, 692, 750, 757, 795
BccI CCATC 5 cut(s) 191, 844, 955, 995, 1016
BceAI ACGGC 7 cut(s) 38, 344, 425, 505, 617, 678, 680
BciT130I CCWGG 2 cut(s) 782, 917
BclI TGATCA 3 cut(s) 429, 843, 1045
BcnI CCSGG 1 cut(s) 983
BcoDI GTCTC 1 cut(s) 357
BfoI RGCGCY 4 cut(s) 153, 600, 668, 791
BlpI GCTNAGC 1 cut(s) 593
Bme1390I CCNGG 3 cut(s) 782, 917, 983
Bme18I GGWCC 2 cut(s) 549, 895
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgBI CACGTC 1 cut(s) 771
BmgT120I GGNCC 5 cut(s) 124, 220, 221, 549, 895
BmiI GGNNCC 5 cut(s) 222, 248, 304, 604, 756
BmrFI CCNGG 3 cut(s) 782, 917, 983
BmsI GCATC 1 cut(s) 795
BpiI GAAGAC 3 cut(s) 665, 708, 984
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 1044
BpuMI CCSGG 1 cut(s) 983
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 5 cut(s) 585, 693, 858, 930, 947
BsaJI CCNNGG 3 cut(s) 120, 298, 758
BsaWI WCCGGW 3 cut(s) 243, 654, 880
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 276, 306, 337, 367
Bsc4I CCNNNNNNNGG 7 cut(s) 121, 406, 447, 494, 612, 661, 916
Bse118I RCCGGY 4 cut(s) 152, 516, 599, 628
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 2 cut(s) 782, 917
BseDI CCNNGG 3 cut(s) 120, 298, 758
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 7 cut(s) 121, 406, 447, 494, 612, 661, 916
BseMII CTCAG 2 cut(s) 536, 584
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 4 cut(s) 8, 23, 65, 68
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 3 cut(s) 357, 518, 630
BseXI GCAGC 6 cut(s) 219, 523, 692, 750, 757, 795
BseYI CCCAGC 1 cut(s) 588
Bsh1236I CGCG 4 cut(s) 262, 300, 575, 710
Bsh1285I CGRYCG 7 cut(s) 360, 448, 492, 521, 610, 633, 687
BshFI GGCC 9 cut(s) 5, 125, 156, 222, 359, 520, 572, 632, 887
BshNI GGYRCC 3 cut(s) 246, 302, 754
BsiEI CGRYCG 7 cut(s) 360, 448, 492, 521, 610, 633, 687
BsiHKAI GWGCWC 1 cut(s) 870
BslFI GGGAC 2 cut(s) 814, 845
BslI CCNNNNNNNGG 7 cut(s) 121, 406, 447, 494, 612, 661, 916
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 814, 845
BsnI GGCC 9 cut(s) 5, 125, 156, 222, 359, 520, 572, 632, 887
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 224, 870
Bsp1720I GCTNAGC 1 cut(s) 593
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 9 cut(s) 5, 125, 156, 222, 359, 520, 572, 632, 887
BspCNI CTCAG 2 cut(s) 537, 585
BspFNI CGCG 4 cut(s) 262, 300, 575, 710
BspLI GGNNCC 5 cut(s) 222, 248, 304, 604, 756
BspPI GGATC 2 cut(s) 546, 829
BspT107I GGYRCC 3 cut(s) 246, 302, 754
BsrFI RCCGGY 4 cut(s) 152, 516, 599, 628
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 4 cut(s) 152, 516, 599, 628
BssECI CCNNGG 3 cut(s) 120, 298, 758
BssNI GRCGYC 5 cut(s) 585, 693, 858, 930, 947
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 782, 917
Bst4CI ACNGT 2 cut(s) 343, 673
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 5 cut(s) 585, 693, 858, 930, 947
BstAPI GCANNNNNTGC 1 cut(s) 754
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 4 cut(s) 141, 148, 154, 601
BstDEI CTNAG 2 cut(s) 545, 593
BstDSI CCRYGG 2 cut(s) 120, 298
BstEII GGTNACC 1 cut(s) 624
BstFNI CGCG 4 cut(s) 262, 300, 575, 710
BstH2I RGCGCY 4 cut(s) 153, 600, 668, 791
BstHHI GCGC 4 cut(s) 152, 599, 667, 790
BstMAI GTCTC 1 cut(s) 357
BstMCI CGRYCG 7 cut(s) 360, 448, 492, 521, 610, 633, 687
BstNI CCWGG 2 cut(s) 782, 917
BstPI GGTNACC 1 cut(s) 624
BstSCI CCNGG 3 cut(s) 780, 915, 981
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 4 cut(s) 262, 300, 575, 710
BstV1I GCAGC 6 cut(s) 219, 523, 692, 750, 757, 795
BstV2I GAAGAC 3 cut(s) 665, 708, 984
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BstZI CGGCCG 3 cut(s) 357, 518, 630
BsuRI GGCC 9 cut(s) 5, 125, 156, 222, 359, 520, 572, 632, 887
BtgI CCRYGG 2 cut(s) 120, 298
BtrI CACGTC 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 1017, 1078
Cac8I GCNNGC 4 cut(s) 141, 148, 154, 601
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 4 cut(s) 152, 599, 667, 790
Cfr10I RCCGGY 4 cut(s) 152, 516, 599, 628
Cfr13I GGNCC 5 cut(s) 124, 220, 221, 549, 895
Cfr42I CCGCGG 1 cut(s) 301
CseI GACGC 3 cut(s) 593, 701, 919
CsiI ACCWGGT 1 cut(s) 780
Csp6I GTAC 1 cut(s) 247
CviAII CATG 4 cut(s) 121, 568, 839, 926
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 545, 593
DraIII CACNNNGTG 1 cut(s) 754
DrdI GACNNNNNNGTC 2 cut(s) 392, 695
DriI GACNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 2 cut(s) 392, 695
EaeI YGGCCR 6 cut(s) 3, 357, 518, 570, 630, 885
EagI CGGCCG 3 cut(s) 357, 518, 630
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 2 cut(s) 40, 55
EclXI CGGCCG 3 cut(s) 357, 518, 630
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 549, 895
Eco52I CGGCCG 3 cut(s) 357, 518, 630
Eco57I CTGAAG 1 cut(s) 498
Eco72I CACGTG 1 cut(s) 751
Eco91I GGTNACC 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 895
EcoO65I GGTNACC 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 780, 915
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 4 cut(s) 124, 571, 842, 929
FaiI YATR 7 cut(s) 122, 434, 436, 569, 833, 840, 927
FaqI GGGAC 2 cut(s) 814, 845
FatI CATG 4 cut(s) 120, 567, 838, 925
FbaI TGATCA 3 cut(s) 429, 843, 1045
FblI GTMKAC 2 cut(s) 396, 687
FriOI GRGCYC 1 cut(s) 224
GlaI GCGC 4 cut(s) 151, 598, 666, 789
GsaI CCCAGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 4 cut(s) 153, 600, 668, 791
HaeIII GGCC 9 cut(s) 5, 125, 156, 222, 359, 520, 572, 632, 887
HgaI GACGC 3 cut(s) 593, 701, 919
HhaI GCGC 4 cut(s) 152, 599, 667, 790
Hin1I GRCGYC 5 cut(s) 585, 693, 858, 930, 947
Hin1II CATG 4 cut(s) 124, 571, 842, 929
Hin6I GCGC 4 cut(s) 150, 597, 665, 788
HinP1I GCGC 4 cut(s) 150, 597, 665, 788
HincII GTYRAC 3 cut(s) 382, 397, 688
HindII GTYRAC 3 cut(s) 382, 397, 688
HinfI GANTC 4 cut(s) 28, 167, 267, 316
HphI GGTGA 7 cut(s) 73, 121, 331, 439, 618, 866, 976
Hpy166II GTNNAC 3 cut(s) 382, 397, 688
Hpy188I TCNGA 7 cut(s) 27, 199, 489, 607, 724, 733, 1050
Hpy188III TCNNGA 7 cut(s) 313, 325, 413, 581, 847, 893, 995
Hpy8I GTNNAC 3 cut(s) 382, 397, 688
HpyAV CCTTC 3 cut(s) 217, 359, 818
HpyCH4III ACNGT 2 cut(s) 343, 673
HpyCH4IV ACGT 5 cut(s) 387, 750, 770, 858, 947
HpyF3I CTNAG 2 cut(s) 545, 593
HpySE526I ACGT 5 cut(s) 387, 750, 770, 858, 947
Hsp92I GRCGYC 5 cut(s) 585, 693, 858, 930, 947
Hsp92II CATG 4 cut(s) 124, 571, 842, 929
HspAI GCGC 4 cut(s) 150, 597, 665, 788
KpnI GGTACC 1 cut(s) 250
KroI GCCGGC 2 cut(s) 152, 599
KroNI GCCGGC 2 cut(s) 154, 601
Ksp22I TGATCA 3 cut(s) 429, 843, 1045
KspI CCGCGG 1 cut(s) 301
LmnI GCTCC 6 cut(s) 196, 246, 327, 490, 608, 725
Lsp1109I GCAGC 6 cut(s) 219, 523, 692, 750, 757, 795
LweI GCATC 1 cut(s) 795
MabI ACCWGGT 1 cut(s) 780
MaeII ACGT 5 cut(s) 387, 750, 770, 858, 947
MaeIII GTNAC 4 cut(s) 343, 624, 854, 948
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 224, 870
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 328, 403, 498, 616
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 161, 310
MmeI TCCRAC 3 cut(s) 126, 177, 967
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 2 cut(s) 152, 599
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 300, 592, 683
MspR9I CCNGG 3 cut(s) 782, 917, 983
MvaI CCWGG 2 cut(s) 782, 917
MvnI CGCG 4 cut(s) 262, 300, 575, 710
NaeI GCCGGC 2 cut(s) 154, 601
NciI CCSGG 1 cut(s) 983
NcoI CCATGG 1 cut(s) 120
NgoMIV GCCGGC 2 cut(s) 152, 599
NlaIII CATG 4 cut(s) 124, 571, 842, 929
NlaIV GGNNCC 5 cut(s) 222, 248, 304, 604, 756
NmeAIII GCCGAG 1 cut(s) 783
NmuCI GTSAC 4 cut(s) 343, 624, 854, 948
PcsI WCGNNNNNNNCGW 5 cut(s) 393, 684, 693, 696, 809
PdiI GCCGGC 2 cut(s) 154, 601
PfeI GAWTC 2 cut(s) 28, 267
PflFI GACNNNGTC 2 cut(s) 349, 695
Ple19I CGATCG 3 cut(s) 448, 492, 610
PleI GAGTC 2 cut(s) 161, 310
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
PpsI GAGTC 2 cut(s) 161, 310
Ppu21I YACGTR 1 cut(s) 751
PpuMI RGGWCCY 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 895
Psp6I CCWGG 2 cut(s) 780, 915
PspCI CACGTG 1 cut(s) 751
PspEI GGTNACC 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 2 cut(s) 780, 915
PspN4I GGNNCC 5 cut(s) 222, 248, 304, 604, 756
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 5 cut(s) 124, 220, 221, 549, 895
PspPPI RGGWCCY 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 538
PsyI GACNNNGTC 2 cut(s) 349, 695
PvuI CGATCG 3 cut(s) 448, 492, 610
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacII CCGCGG 1 cut(s) 301
SalI GTCGAC 2 cut(s) 395, 686
SaqAI TTAA 1 cut(s) 456
Sau96I GGNCC 5 cut(s) 124, 220, 221, 549, 895
SchI GAGTC 2 cut(s) 161, 310
ScrFI CCNGG 3 cut(s) 782, 917, 983
SduI GDGCHC 2 cut(s) 224, 870
SexAI ACCWGGT 1 cut(s) 780
SfaNI GCATC 1 cut(s) 795
Sfr303I CCGCGG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 2 cut(s) 549, 895
SmlI CTYRAG 1 cut(s) 1059
SmoI CTYRAG 1 cut(s) 1059
Sse9I AATT 4 cut(s) 328, 403, 498, 616
StyD4I CCNGG 3 cut(s) 780, 915, 981
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 343, 673
TaiI ACGT 5 cut(s) 390, 753, 773, 861, 950
TaqI TCGA 7 cut(s) 165, 363, 396, 444, 563, 687, 699
TaqII GACCGA 2 cut(s) 262, 367
TasI AATT 4 cut(s) 328, 403, 498, 616
TauI GCSGC 6 cut(s) 89, 146, 262, 303, 575, 912
TfiI GAWTC 2 cut(s) 28, 267
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 1024
TseFI GTSAC 4 cut(s) 343, 624, 854, 948
TseI GCWGC 6 cut(s) 232, 511, 680, 745, 763, 808
Tsp45I GTSAC 4 cut(s) 343, 624, 854, 948
TspDTI ATGAA 1 cut(s) 914
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 1024
Tth111I GACNNNGTC 2 cut(s) 349, 695
VpaK11BI GGWCC 2 cut(s) 549, 895
XapI RAATTY 3 cut(s) 403, 498, 616
XmiI GTMKAC 2 cut(s) 396, 687
ZraI GACGTC 2 cut(s) 859, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.