Rh4BG395100

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000614
Physical Location & Seq
Reverse (-)
54605098 .. 54606371
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG395100.1

Sequence Viewer

Length: 627 bp
ATGGCGGTGGAAACGGCGGCGTATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAGATCGAAAGGCTGCTCTGTCATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCAAGTCATGGTGAAGCGGATCGGAAATCTGAGCGAGTACTCGTCGATCTTGCGCCGCCACGTGGTCCCCTGCCGGCTTTCTTGGAGCGATTTGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATTTGCAAGGGTTTATGATCAACGTGAGTCGATACGACAGCGTTTTTGTGCTCAATGGGGTCCCGGTGATTATGCCGGAGCTGTATCACAACGGCTGGCTTTTGGTTCACGGAATCAGTGAGGTTCTTGAACTTCCAGTGAGTCTAACTCAGAGCCCAATTCAGAGTCAAACGGAGCCAGTGGTGGATACGGTGGATCCGGTGGCTTCTTCACCTCCCTCTCCGGCACTTCATCGCAGCTCCGGTGAGGTTCTTTGTTTGCAGGCCTTCATAATCTGGTTTGGCAATCTTCAAATCGAAACTTATGACAGCATCCTTTCTCCCAACATCAAGAAGGACTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

208

Amino Acids

23.22

Weight (kDa)

5.7

Isoelectric Point (pI)

68.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 24 - 136 2e-09 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AciI CCGC 4 cut(s) 5, 17, 169, 208
AclWI GGATC 3 cut(s) 179, 470, 483
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 119, 191
AfiI CCNNNNNNNGG 2 cut(s) 160, 214
AgsI TTSAA 4 cut(s) 92, 247, 410, 572
AluBI AGCT 2 cut(s) 361, 519
AluI AGCT 2 cut(s) 361, 519
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 3 cut(s) 179, 470, 483
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 66, 516
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 217, 340
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 175, 358, 483, 536
AvaII GGWCC 2 cut(s) 217, 340
BamHI GGATCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 437
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 53, 528
BccI CCATC 1 cut(s) 254
BceAI ACGGC 2 cut(s) 30, 388
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 4 cut(s) 18, 67, 208, 517
BlsI GCNGC 4 cut(s) 19, 68, 209, 518
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 2 cut(s) 217, 340
BmgT120I GGNCC 2 cut(s) 217, 340
BmiI GGNNCC 5 cut(s) 219, 341, 342, 456, 477
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpuEI CTTGAG 2 cut(s) 98, 275
BpuMI CCSGG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 478, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 214
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 416, 458
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 265, 591
BseLI CCNNNNNNNGG 2 cut(s) 160, 214
BseMII CTCAG 3 cut(s) 44, 173, 443
BseNI ACTGG 2 cut(s) 416, 458
BseXI GCAGC 2 cut(s) 53, 528
BshFI GGCC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 6 cut(s) 226, 344, 356, 479, 503, 522
BslFI GGGAC 3 cut(s) 203, 277, 326
BslI CCNNNNNNNGG 2 cut(s) 160, 214
BsmFI GGGAC 3 cut(s) 203, 277, 326
BsnI GGCC 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 333, 437
Bsp143I GATC 5 cut(s) 56, 171, 198, 297, 475
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 4 cut(s) 5, 17, 169, 208
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 3 cut(s) 45, 174, 442
BspLI GGNNCC 5 cut(s) 219, 341, 342, 456, 477
BspPI GGATC 3 cut(s) 179, 470, 483
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 416, 458
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 5 cut(s) 56, 171, 198, 297, 475
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 136, 268, 472
Bst6I CTCTTC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 4 cut(s) 43, 227, 377, 543
BstDEI CTNAG 3 cut(s) 53, 182, 429
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 265, 591
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 59, 174, 201, 300, 478
BstMBI GATC 5 cut(s) 56, 171, 198, 297, 475
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 53, 528
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 497
BtsCI GGATG 2 cut(s) 265, 591
BtsIMutI CAGTG 4 cut(s) 40, 403, 423, 465
Cac8I GCNNGC 4 cut(s) 43, 227, 377, 543
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 217, 340
Csp6I GTAC 2 cut(s) 118, 190
CviAII CATG 4 cut(s) 76, 104, 127, 160
CviQI GTAC 2 cut(s) 118, 190
DdeI CTNAG 3 cut(s) 53, 182, 429
DpnI GATC 5 cut(s) 58, 173, 200, 299, 477
DpnII GATC 5 cut(s) 56, 171, 198, 297, 475
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 217, 340
Eco72I CACGTG 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 4 cut(s) 79, 107, 130, 163
FaiI YATR 8 cut(s) 77, 105, 128, 161, 296, 353, 551, 585
FalI AAGNNNNNCTT 1 cut(s) 602
FaqI GGGAC 3 cut(s) 203, 277, 326
FatI CATG 4 cut(s) 75, 103, 126, 159
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 18, 67, 208, 517
FokI GGATG 2 cut(s) 272, 578
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 18, 67, 208, 517
GlaI GCGC 1 cut(s) 206
GluI GCNGC 4 cut(s) 18, 67, 208, 517
HaeIII GGCC 1 cut(s) 545
HapII CCGG 6 cut(s) 226, 344, 356, 479, 503, 522
HhaI GCGC 1 cut(s) 207
Hin1II CATG 4 cut(s) 79, 107, 130, 163
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 2 cut(s) 132, 151
HindII GTYRAC 2 cut(s) 132, 151
HinfI GANTC 5 cut(s) 250, 307, 393, 421, 445
HpaII CCGG 6 cut(s) 226, 344, 356, 479, 503, 522
HphI GGTGA 4 cut(s) 175, 358, 483, 536
Hpy166II GTNNAC 3 cut(s) 132, 151, 388
Hpy188I TCNGA 4 cut(s) 176, 183, 432, 444
Hpy188III TCNNGA 4 cut(s) 89, 254, 407, 610
Hpy8I GTNNAC 3 cut(s) 132, 151, 388
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 556, 607
HpyCH4III ACNGT 3 cut(s) 136, 268, 472
HpyCH4IV ACGT 2 cut(s) 213, 303
HpyCH4V TGCA 3 cut(s) 97, 286, 541
HpyF3I CTNAG 3 cut(s) 53, 182, 429
HpySE526I ACGT 2 cut(s) 213, 303
Hsp92II CATG 4 cut(s) 79, 107, 130, 163
HspAI GCGC 1 cut(s) 205
KflI GGGWCCC 1 cut(s) 340
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 5 cut(s) 56, 171, 198, 297, 475
LmnI GCTCC 5 cut(s) 148, 237, 358, 454, 524
Lsp1109I GCAGC 2 cut(s) 53, 528
LweI GCATC 1 cut(s) 600
MaeII ACGT 2 cut(s) 213, 303
MalI GATC 5 cut(s) 58, 173, 200, 299, 477
MboI GATC 5 cut(s) 56, 171, 198, 297, 475
MboII GAAGA 4 cut(s) 130, 259, 480, 560
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 333, 437
MluCI AATT 3 cut(s) 98, 280, 438
MlyI GAGTC 4 cut(s) 259, 316, 430, 454
MnlI CCTC 6 cut(s) 250, 267, 394, 504, 508, 520
MroNI GCCGGC 1 cut(s) 225
MspI CCGG 6 cut(s) 226, 344, 356, 479, 503, 522
MspR9I CCNGG 1 cut(s) 344
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 103
NdeII GATC 5 cut(s) 56, 171, 198, 297, 475
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 4 cut(s) 79, 107, 130, 163
NlaIV GGNNCC 5 cut(s) 219, 341, 342, 456, 477
PceI AGGCCT 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 393
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 4 cut(s) 19, 68, 209, 518
PleI GAGTC 4 cut(s) 258, 315, 429, 453
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 4 cut(s) 258, 315, 429, 453
Ppu21I YACGTR 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
PspCI CACGTG 1 cut(s) 214
PspN4I GGNNCC 5 cut(s) 219, 341, 342, 456, 477
PspPI GGNCC 2 cut(s) 217, 340
PspPPI RGGWCCY 1 cut(s) 340
PsrI GAACNNNNNNTAC 2 cut(s) 14, 46
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 119, 191
RsaNI GTAC 2 cut(s) 118, 190
SatI GCNGC 4 cut(s) 18, 67, 208, 517
Sau3AI GATC 5 cut(s) 56, 171, 198, 297, 475
Sau96I GGNCC 2 cut(s) 217, 340
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 4 cut(s) 259, 316, 430, 454
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 333, 437
SetI ASST 8 cut(s) 51, 216, 306, 363, 405, 496, 521, 531
SfaNI GCATC 1 cut(s) 600
SinI GGWCC 2 cut(s) 217, 340
SmlI CTYRAG 2 cut(s) 113, 254
SmoI CTYRAG 2 cut(s) 113, 254
Sse9I AATT 3 cut(s) 98, 280, 438
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 4 cut(s) 5, 17, 169, 208
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 136, 268, 472
TaiI ACGT 2 cut(s) 216, 306
TaqI TCGA 4 cut(s) 59, 197, 310, 576
TasI AATT 3 cut(s) 98, 280, 438
TatI WGTACW 1 cut(s) 189
TauI GCSGC 2 cut(s) 20, 210
TfiI GAWTC 1 cut(s) 393
TscAI CASTG 4 cut(s) 40, 403, 423, 465
TseI GCWGC 2 cut(s) 66, 516
TspDTI ATGAA 2 cut(s) 500, 538
TspGWI ACGGA 2 cut(s) 405, 467
TspRI CASTG 4 cut(s) 40, 403, 423, 465
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 217, 340
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.