FvH4_6g20740

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000614
Physical Location & Seq
Forward (+)
14297658 .. 14298752
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20740.t1

Sequence Viewer

Length: 969 bp
ATGTCCCGCTCACTCGACCTCGCCTCCAGCTCCTTCACCTCCCAGCCGCCGGAACTGACCGTCTTCGCTCCGGCCGACGAAGCCTTCCCCTACTCCGGCCCACCCAGTCTTAACCTCCTCCGCTACCAACTCCTCCCCGTCACCTTCCATCTCCGATCACTCAAGTCCCTCCCTTTCGGCGCCAAGATCGGGACTCTGCTAGACGGCTACTCCCTCACCGTCACAACACTCCCGGCCGACGGCCTCGTCTCGCTCAACAACGTCACCGTCACGGCGTCCCCAATCTTCGACGACGGCTCGTTGATCATCTATGGCACCAACCGCTTCTTCGACCCGTATTTCCGGATCTCGGGTCCGATTCCGAGCTACGGCCGCAAGAATCGCTGCTGCCTGGCGCCGCGAAACCCTAATGAGACTGCGGAGATGGCGGAAACGGCGGCGTTTTACCCGTTCAGTGACGCGAGCAAGGTGCTGACATCGGAAGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTCCCTGACCAAGTTGACCGTCTTCGCTCCCGTTGACCATGCCATGGGCTTCTTGATTAACGTGAGTCGATACGACGGCGTTTTGGTGCTGAATGGAGTCTCGGTGATCATGCCGGAGATGTATCACAACGACTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAGTTTCTTCCAGAGAGTCCACCGGAGCAAGTGGTGGCTACTTCGCCTGATTCTGCTTCTTCACCTGAATCTGATGAAGTGAGTCCAGATGAGAGTCCTCTAACAGAGCCTGCAGATGAGGCAATCGAGGTGCCTTCTTCGCCGAAATTCGATAGCGGCGACTTGGAGGAATTTGAGGCCAGCGACTCGACTGAGATGTTTGCTAACATGACCGAGGATGAAGCAGCCATTTCACACAGGCGCTTCTTTGTTTACAGGCCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

323

Amino Acids

35.24

Weight (kDa)

4.43

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 4 cut(s) 179, 314, 394, 832
AccB7I CCANNNNNTGG 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 2 cut(s) 400, 461
AccIII TCCGGA 1 cut(s) 342
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 3 cut(s) 72, 234, 370
AcsI RAATTY 2 cut(s) 848, 872
AcyI GRCGYC 3 cut(s) 180, 275, 395
AfiI CCNNNNNNNGG 7 cut(s) 49, 95, 189, 239, 349, 368, 580
AgsI TTSAA 1 cut(s) 512
AjnI CCWGG 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 2 cut(s) 30, 366
AluI AGCT 2 cut(s) 30, 366
Alw26I GTCTC 3 cut(s) 253, 407, 640
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 7 cut(s) 72, 97, 234, 241, 370, 879, 959
ApeKI GCWGC 4 cut(s) 384, 387, 486, 926
ApoI RAATTY 2 cut(s) 848, 872
AspLEI GCGC 3 cut(s) 182, 397, 945
AspS9I GGNCC 2 cut(s) 98, 353
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 6 cut(s) 28, 133, 208, 256, 652, 756
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 353
BanI GGYRCC 4 cut(s) 179, 314, 394, 832
BbsI GAAGAC 2 cut(s) 55, 550
BbvI GCAGC 4 cut(s) 371, 374, 473, 938
BccI CCATC 2 cut(s) 156, 418
BceAI ACGGC 7 cut(s) 220, 256, 288, 310, 385, 450, 628
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 1 cut(s) 392
BclI TGATCA 2 cut(s) 303, 642
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 253, 407, 640
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 813
BfoI RGCGCY 3 cut(s) 183, 398, 946
BisI GCNGC 9 cut(s) 47, 373, 385, 388, 398, 438, 487, 859, 927
BlsI GCNGC 9 cut(s) 48, 374, 386, 389, 399, 439, 488, 860, 928
Bme1390I CCNGG 2 cut(s) 233, 392
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 98, 353
BmiI GGNNCC 5 cut(s) 181, 316, 354, 396, 834
BmrFI CCNGG 2 cut(s) 233, 392
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 55, 550
BpmI CTGGAG 1 cut(s) 10
BpuEI CTTGAG 3 cut(s) 146, 518, 722
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 3 cut(s) 180, 275, 395
BsaJI CCNNGG 3 cut(s) 523, 579, 915
BsaWI WCCGGW 2 cut(s) 342, 724
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 194, 224, 624, 654
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 95, 189, 239, 349, 368, 580
Bse1I ACTGG 2 cut(s) 105, 674
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 3 cut(s) 523, 579, 915
BseGI GGATG 1 cut(s) 925
BseLI CCNNNNNNNGG 7 cut(s) 49, 95, 189, 239, 349, 368, 580
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 2 cut(s) 105, 674
BseRI GAGGAG 2 cut(s) 107, 122
BseX3I CGGCCG 3 cut(s) 72, 234, 370
BseXI GCAGC 4 cut(s) 371, 374, 473, 938
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 2 cut(s) 400, 461
Bsh1285I CGRYCG 3 cut(s) 75, 237, 373
BshFI GGCC 7 cut(s) 74, 99, 236, 243, 372, 881, 961
BshNI GGYRCC 4 cut(s) 179, 314, 394, 832
BsiEI CGRYCG 3 cut(s) 75, 237, 373
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 7 cut(s) 50, 71, 96, 233, 343, 650, 725
BslFI GGGAC 4 cut(s) 151, 205, 262, 523
BslI CCNNNNNNNGG 7 cut(s) 49, 95, 189, 239, 349, 368, 580
BsmAI GTCTC 3 cut(s) 253, 407, 640
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 4 cut(s) 151, 205, 262, 523
BsnI GGCC 7 cut(s) 74, 99, 236, 243, 372, 881, 961
BsoBI CYCGRG 1 cut(s) 349
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 5 cut(s) 155, 186, 303, 345, 642
Bsp19I CCATGG 2 cut(s) 523, 579
BspANI GGCC 7 cut(s) 74, 99, 236, 243, 372, 881, 961
BspCNI CTCAG 1 cut(s) 886
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 2 cut(s) 400, 461
BspLI GGNNCC 5 cut(s) 181, 316, 354, 396, 834
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 4 cut(s) 179, 314, 394, 832
BsrBI CCGCTC 1 cut(s) 9
BsrI ACTGG 2 cut(s) 105, 674
BssECI CCNNGG 3 cut(s) 523, 579, 915
BssMI GATC 5 cut(s) 155, 186, 303, 345, 642
BssNI GRCGYC 3 cut(s) 180, 275, 395
BssT1I CCWWGG 2 cut(s) 523, 579
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 4 cut(s) 61, 220, 268, 556
BstACI GRCGYC 3 cut(s) 180, 275, 395
BstC8I GCNNGC 3 cut(s) 463, 813, 883
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 2 cut(s) 523, 579
BstF5I GGATG 1 cut(s) 925
BstFNI CGCG 2 cut(s) 400, 461
BstH2I RGCGCY 3 cut(s) 183, 398, 946
BstHHI GCGC 3 cut(s) 182, 397, 945
BstKTI GATC 5 cut(s) 158, 189, 306, 348, 645
BstMAI GTCTC 3 cut(s) 253, 407, 640
BstMBI GATC 5 cut(s) 155, 186, 303, 345, 642
BstMCI CGRYCG 3 cut(s) 75, 237, 373
BstMWI GCNNNNNNNGC 8 cut(s) 80, 321, 372, 381, 425, 434, 821, 841
BstNI CCWGG 1 cut(s) 392
BstSCI CCNGG 2 cut(s) 231, 390
BstSFI CTRYAG 1 cut(s) 813
BstUI CGCG 2 cut(s) 400, 461
BstV1I GCAGC 4 cut(s) 371, 374, 473, 938
BstV2I GAAGAC 2 cut(s) 55, 550
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BstZI CGGCCG 3 cut(s) 72, 234, 370
BsuRI GGCC 7 cut(s) 74, 99, 236, 243, 372, 881, 961
BtgI CCRYGG 2 cut(s) 523, 579
BtsCI GGATG 1 cut(s) 925
BtsIMutI CAGTG 2 cut(s) 460, 697
Cac8I GCNNGC 3 cut(s) 463, 813, 883
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 3 cut(s) 182, 397, 945
Cfr13I GGNCC 2 cut(s) 98, 353
CseI GACGC 2 cut(s) 264, 467
CviAII CATG 5 cut(s) 524, 575, 580, 646, 910
DdeI CTNAG 1 cut(s) 894
DinI GGCGCC 2 cut(s) 181, 396
DpnI GATC 5 cut(s) 157, 188, 305, 347, 644
DpnII GATC 5 cut(s) 155, 186, 303, 345, 642
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 3 cut(s) 72, 234, 370
EagI CGGCCG 3 cut(s) 72, 234, 370
EciI GGCGGA 1 cut(s) 443
EclXI CGGCCG 3 cut(s) 72, 234, 370
Eco130I CCWWGG 2 cut(s) 523, 579
Eco147I AGGCCT 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 353
Eco52I CGGCCG 3 cut(s) 72, 234, 370
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 523, 579
EgeI GGCGCC 2 cut(s) 181, 396
EheI GGCGCC 2 cut(s) 181, 396
ErhI CCWWGG 2 cut(s) 523, 579
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 5 cut(s) 527, 578, 583, 649, 913
FaiI YATR 7 cut(s) 312, 497, 525, 576, 581, 647, 911
FaqI GGGAC 4 cut(s) 151, 205, 262, 523
FatI CATG 5 cut(s) 523, 574, 579, 645, 909
FauI CCCGC 1 cut(s) 14
FbaI TGATCA 2 cut(s) 303, 642
Fnu4HI GCNGC 9 cut(s) 47, 373, 385, 388, 398, 438, 487, 859, 927
FokI GGATG 1 cut(s) 932
Fsp4HI GCNGC 9 cut(s) 47, 373, 385, 388, 398, 438, 487, 859, 927
FspBI CTAG 1 cut(s) 200
GlaI GCGC 3 cut(s) 181, 396, 944
GluI GCNGC 9 cut(s) 47, 373, 385, 388, 398, 438, 487, 859, 927
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 10
HaeII RGCGCY 3 cut(s) 183, 398, 946
HaeIII GGCC 7 cut(s) 74, 99, 236, 243, 372, 881, 961
HapII CCGG 7 cut(s) 50, 71, 96, 233, 343, 650, 725
HgaI GACGC 2 cut(s) 264, 467
HhaI GCGC 3 cut(s) 182, 397, 945
Hin1I GRCGYC 3 cut(s) 180, 275, 395
Hin1II CATG 5 cut(s) 527, 578, 583, 649, 913
Hin6I GCGC 3 cut(s) 180, 395, 943
HinP1I GCGC 3 cut(s) 180, 395, 943
HincII GTYRAC 2 cut(s) 552, 571
HindII GTYRAC 2 cut(s) 552, 571
HpaII CCGG 7 cut(s) 50, 71, 96, 233, 343, 650, 725
HphI GGTGA 6 cut(s) 28, 133, 208, 256, 652, 756
Hpy166II GTNNAC 5 cut(s) 552, 571, 682, 722, 955
Hpy188I TCNGA 5 cut(s) 155, 357, 363, 481, 775
Hpy188III TCNNGA 7 cut(s) 190, 343, 509, 589, 701, 713, 788
Hpy8I GTNNAC 5 cut(s) 552, 571, 682, 722, 955
Hpy99I CGWCG 5 cut(s) 80, 242, 293, 296, 614
HpyAV CCTTC 5 cut(s) 43, 94, 154, 476, 846
HpyCH4III ACNGT 4 cut(s) 61, 220, 268, 556
HpyCH4IV ACGT 2 cut(s) 261, 597
HpyCH4V TGCA 2 cut(s) 517, 815
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 321, 372, 381, 425, 434, 821, 841
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 2 cut(s) 261, 597
Hsp92I GRCGYC 3 cut(s) 180, 275, 395
Hsp92II CATG 5 cut(s) 527, 578, 583, 649, 913
HspAI GCGC 3 cut(s) 180, 395, 943
KasI GGCGCC 2 cut(s) 179, 394
Kpn2I TCCGGA 1 cut(s) 342
Ksp22I TGATCA 2 cut(s) 303, 642
Kzo9I GATC 5 cut(s) 155, 186, 303, 345, 642
LmnI GCTCC 4 cut(s) 35, 73, 568, 727
Lsp1109I GCAGC 4 cut(s) 371, 374, 473, 938
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 261, 597
MaeIII GTNAC 5 cut(s) 139, 220, 262, 268, 455
MalI GATC 5 cut(s) 157, 188, 305, 347, 644
MbiI CCGCTC 1 cut(s) 9
MboI GATC 5 cut(s) 155, 186, 303, 345, 642
MboII GAAGA 7 cut(s) 55, 277, 319, 550, 701, 753, 831
MflI RGATCY 1 cut(s) 345
MluCI AATT 3 cut(s) 518, 848, 872
Mly113I GGCGCC 2 cut(s) 180, 395
MlyI GAGTC 7 cut(s) 187, 610, 642, 727, 793, 805, 881
MroI TCCGGA 1 cut(s) 342
MseI TTAA 2 cut(s) 111, 594
MspI CCGG 7 cut(s) 50, 71, 96, 233, 343, 650, 725
MspR9I CCNGG 2 cut(s) 233, 392
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 2 cut(s) 400, 461
MwoI GCNNNNNNNGC 8 cut(s) 80, 321, 372, 381, 425, 434, 821, 841
NarI GGCGCC 2 cut(s) 180, 395
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 2 cut(s) 523, 579
NdeII GATC 5 cut(s) 155, 186, 303, 345, 642
NlaIII CATG 5 cut(s) 527, 578, 583, 649, 913
NlaIV GGNNCC 5 cut(s) 181, 316, 354, 396, 834
NmuCI GTSAC 5 cut(s) 139, 220, 262, 268, 455
PceI AGGCCT 1 cut(s) 961
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 858
PfeI GAWTC 5 cut(s) 358, 379, 687, 752, 770
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 9 cut(s) 48, 374, 386, 389, 399, 439, 488, 860, 928
PleI GAGTC 7 cut(s) 187, 609, 641, 726, 792, 804, 881
PluTI GGCGCC 2 cut(s) 183, 398
PpsI GAGTC 7 cut(s) 187, 609, 641, 726, 792, 804, 881
Psp6I CCWGG 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 5 cut(s) 181, 316, 354, 396, 834
PspPI GGNCC 2 cut(s) 98, 353
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 1 cut(s) 345
SaqAI TTAA 2 cut(s) 111, 594
SatI GCNGC 9 cut(s) 47, 373, 385, 388, 398, 438, 487, 859, 927
Sau3AI GATC 5 cut(s) 155, 186, 303, 345, 642
Sau96I GGNCC 2 cut(s) 98, 353
SchI GAGTC 7 cut(s) 187, 610, 642, 727, 793, 805, 881
ScrFI CCNGG 2 cut(s) 233, 392
SfcI CTRYAG 1 cut(s) 813
SfoI GGCGCC 2 cut(s) 181, 396
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 3 cut(s) 161, 533, 701
SmoI CTYRAG 3 cut(s) 161, 533, 701
Sse9I AATT 3 cut(s) 518, 848, 872
SseBI AGGCCT 1 cut(s) 961
SspDI GGCGCC 2 cut(s) 179, 394
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 2 cut(s) 231, 390
StyI CCWWGG 2 cut(s) 523, 579
TaaI ACNGT 4 cut(s) 61, 220, 268, 556
TaiI ACGT 2 cut(s) 264, 600
TaqI TCGA 7 cut(s) 15, 288, 330, 604, 828, 852, 890
TaqII GACCGA 1 cut(s) 929
TasI AATT 3 cut(s) 518, 848, 872
TauI GCSGC 5 cut(s) 49, 375, 400, 440, 861
TfiI GAWTC 5 cut(s) 358, 379, 687, 752, 770
Tru1I TTAA 2 cut(s) 111, 594
Tru9I TTAA 2 cut(s) 111, 594
TscAI CASTG 2 cut(s) 460, 697
TseFI GTSAC 5 cut(s) 139, 220, 262, 268, 455
TseI GCWGC 4 cut(s) 384, 387, 486, 926
Tsp45I GTSAC 5 cut(s) 139, 220, 262, 268, 455
TspDTI ATGAA 2 cut(s) 792, 936
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 2 cut(s) 460, 697
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 2 cut(s) 848, 872
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.