Rmu_sc0000424.1_g000029

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
OG0000614
Physical Location & Seq
Reverse (-)
119602 .. 120456
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000424.1_g000029.1.cds

Sequence Viewer

Length: 855 bp
ctgccgtccgaccgcctcgtctcgctcaacaacgtcaccgtcacggcgtccccaattttcgacgacgggtcgttgatcatcttcggaaccaacaaattcttcgacccgtatttccggatctcgggtccgattcggagctatagccccaagaatctccgctgcttggcgcagcgaaaccctaacgaagctatggctgtggaaacggcggcgcattacccgttcagtgaagcaagcaaggtgctgaaattgaaaggctgctctgttatggcttcgtttcttgaaatgcaattccatgggtttctcaagtaccagaccatgttgaccgttttcgctcccgttgaccaagccatggtgccccgaatcggagatctgagcgggtactcgtccatcttccgccgccacgtggtcccctgcaagctttcttggaacgatttggtgagtctatacgacggcactgtgttgagaactaatctgcaagggtttatgatcaacatcactcgatacgacggcgttttggtgctcaatggggtcccggtgataatgccggagatgtatcacaacggctggcttgtggttcacggaatcagtgaggttcttgagtttccagagagtccaccggagcaagtggtggctccttcacctgtcaatgaggcagatggtcacagctccggtgaggatgagagtgccggaacagagcctccagaggaagtaatagaggtgccttcttcaccggaattcgatagcagcgattcggaggaattagataccggcgattctgagctatttgctaacatgtcttccgaggatgaaggagccatttcacacaggcgcttctttgtttacaggccttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

284

Amino Acids

31.45

Weight (kDa)

4.68

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 352, 718
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 6 cut(s) 13, 157, 206, 375, 394, 397
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 95, 734
AcvI CACGTG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 308, 380
AfiI CCNNNNNNNGG 5 cut(s) 121, 163, 349, 362, 403
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 2 cut(s) 250, 281
AhdI GACNNNNNGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 682, 714
AluBI AGCT 5 cut(s) 138, 188, 418, 666, 781
AluI AGCT 5 cut(s) 138, 188, 418, 666, 781
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 1 cut(s) 845
ApeKI GCWGC 4 cut(s) 159, 169, 255, 744
ApoI RAATTY 2 cut(s) 95, 734
AspLEI GCGC 3 cut(s) 169, 211, 831
AspS9I GGNCC 3 cut(s) 125, 406, 529
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 6 cut(s) 28, 448, 547, 630, 683, 720
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 3 cut(s) 125, 406, 529
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 2 cut(s) 352, 718
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 4 cut(s) 146, 181, 242, 756
BccI CCATC 2 cut(s) 395, 650
BceAI ACGGC 5 cut(s) 60, 219, 466, 523, 577
BclI TGATCA 2 cut(s) 75, 486
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 832
BglII AGATCT 1 cut(s) 367
BisI GCNGC 6 cut(s) 160, 170, 207, 256, 397, 745
BlsI GCNGC 6 cut(s) 161, 171, 208, 257, 398, 746
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 3 cut(s) 125, 406, 529
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 125, 406, 529
BmiI GGNNCC 9 cut(s) 88, 126, 354, 408, 530, 531, 633, 720, 814
BmrFI CCNGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 287, 617
BpuMI CCSGG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 292, 348, 801
BsaWI WCCGGW 4 cut(s) 114, 616, 668, 730
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 163, 349, 362, 403
Bse118I RCCGGY 1 cut(s) 767
Bse8I GATNNNNATC 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 292, 348, 801
BseGI GGATG 2 cut(s) 682, 811
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 5 cut(s) 121, 163, 349, 362, 403
BseMII CTCAG 2 cut(s) 362, 768
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 4 cut(s) 146, 181, 242, 756
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 847
BshNI GGYRCC 2 cut(s) 352, 718
BsiEI CGRYCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 8 cut(s) 115, 533, 545, 617, 669, 687, 731, 768
BslFI GGGAC 3 cut(s) 34, 392, 515
BslI CCNNNNNNNGG 5 cut(s) 121, 163, 349, 362, 403
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 3 cut(s) 34, 392, 515
BsnI GGCC 1 cut(s) 847
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 357, 522
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 4 cut(s) 75, 117, 367, 486
Bsp19I CCATGG 2 cut(s) 292, 348
BspACI CCGC 6 cut(s) 13, 157, 206, 375, 394, 397
BspANI GGCC 1 cut(s) 847
BspCNI CTCAG 2 cut(s) 363, 769
BspEI TCCGGA 1 cut(s) 114
BspLI GGNNCC 9 cut(s) 88, 126, 354, 408, 530, 531, 633, 720, 814
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 352, 718
BsrBI CCGCTC 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 767
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 3 cut(s) 292, 348, 801
BssMI GATC 4 cut(s) 75, 117, 367, 486
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 292, 348
Bst4CI ACNGT 3 cut(s) 40, 325, 457
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 232, 416, 566
BstDEI CTNAG 2 cut(s) 371, 777
BstDSI CCRYGG 2 cut(s) 292, 348
BstF5I GGATG 2 cut(s) 682, 811
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 3 cut(s) 169, 211, 831
BstKTI GATC 4 cut(s) 78, 120, 370, 489
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 4 cut(s) 75, 117, 367, 486
BstMCI CGRYCG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 1 cut(s) 531
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 146, 181, 242, 756
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 117, 367
BstYI RGATCY 2 cut(s) 117, 367
BsuRI GGCC 1 cut(s) 847
BtgI CCRYGG 2 cut(s) 292, 348
BtsCI GGATG 2 cut(s) 682, 811
BtsIMutI CAGTG 3 cut(s) 229, 453, 592
Cac8I GCNNGC 3 cut(s) 232, 416, 566
CfoI GCGC 3 cut(s) 169, 211, 831
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 3 cut(s) 125, 406, 529
CseI GACGC 1 cut(s) 36
Csp6I GTAC 2 cut(s) 307, 379
CviAII CATG 4 cut(s) 293, 316, 349, 793
CviQI GTAC 2 cut(s) 307, 379
DdeI CTNAG 2 cut(s) 371, 777
DpnI GATC 4 cut(s) 77, 119, 369, 488
DpnII GATC 4 cut(s) 75, 117, 367, 486
DrdI GACNNNNNNGTC 1 cut(s) 17
DriI GACNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 67
EciI GGCGGA 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 292, 348
Eco147I AGGCCT 1 cut(s) 847
Eco47I GGWCC 3 cut(s) 125, 406, 529
Eco72I CACGTG 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 734
EcoT14I CCWWGG 2 cut(s) 292, 348
ErhI CCWWGG 2 cut(s) 292, 348
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 296, 319, 352, 796
FaqI GGGAC 3 cut(s) 34, 392, 515
FatI CATG 4 cut(s) 292, 315, 348, 792
FauI CCCGC 1 cut(s) 368
FbaI TGATCA 2 cut(s) 75, 486
Fnu4HI GCNGC 6 cut(s) 160, 170, 207, 256, 397, 745
FokI GGATG 2 cut(s) 689, 818
Fsp4HI GCNGC 6 cut(s) 160, 170, 207, 256, 397, 745
GlaI GCGC 3 cut(s) 168, 210, 830
GluI GCNGC 6 cut(s) 160, 170, 207, 256, 397, 745
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 1 cut(s) 847
HapII CCGG 8 cut(s) 115, 533, 545, 617, 669, 687, 731, 768
HgaI GACGC 1 cut(s) 36
HhaI GCGC 3 cut(s) 169, 211, 831
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 4 cut(s) 296, 319, 352, 796
Hin6I GCGC 3 cut(s) 167, 209, 829
HinP1I GCGC 3 cut(s) 167, 209, 829
HincII GTYRAC 2 cut(s) 321, 340
HindII GTYRAC 2 cut(s) 321, 340
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 8 cut(s) 130, 151, 360, 439, 582, 610, 749, 773
HpaII CCGG 8 cut(s) 115, 533, 545, 617, 669, 687, 731, 768
HphI GGTGA 6 cut(s) 28, 448, 547, 630, 683, 720
Hpy166II GTNNAC 5 cut(s) 321, 340, 577, 614, 841
Hpy188I TCNGA 9 cut(s) 10, 86, 129, 135, 365, 372, 754, 778, 802
Hpy188III TCNNGA 5 cut(s) 115, 278, 596, 605, 701
Hpy8I GTNNAC 5 cut(s) 321, 340, 577, 614, 841
Hpy99I CGWCG 4 cut(s) 65, 68, 452, 509
HpyAV CCTTC 3 cut(s) 645, 732, 803
HpyCH4III ACNGT 3 cut(s) 40, 325, 457
HpyCH4IV ACGT 2 cut(s) 33, 402
HpyCH4V TGCA 3 cut(s) 286, 414, 475
HpyF3I CTNAG 2 cut(s) 371, 777
HpySE526I ACGT 2 cut(s) 33, 402
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 4 cut(s) 296, 319, 352, 796
HspAI GCGC 3 cut(s) 167, 209, 829
KflI GGGWCCC 1 cut(s) 529
Kpn2I TCCGGA 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 75, 486
Kzo9I GATC 4 cut(s) 75, 117, 367, 486
LmnI GCTCC 6 cut(s) 135, 337, 619, 637, 671, 812
Lsp1109I GCAGC 4 cut(s) 146, 181, 242, 756
MaeII ACGT 2 cut(s) 33, 402
MaeIII GTNAC 3 cut(s) 34, 40, 659
MalI GATC 4 cut(s) 77, 119, 369, 488
MbiI CCGCTC 1 cut(s) 375
MboI GATC 4 cut(s) 75, 117, 367, 486
MboII GAAGA 5 cut(s) 73, 91, 382, 717, 789
MflI RGATCY 2 cut(s) 117, 367
MhlI GDGCHC 2 cut(s) 357, 522
MluCI AATT 6 cut(s) 54, 95, 245, 287, 734, 758
MlyI GAGTC 2 cut(s) 448, 619
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 9 cut(s) 26, 583, 643, 667, 697, 708, 709, 748, 796
MroI TCCGGA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 8 cut(s) 115, 533, 545, 617, 669, 687, 731, 768
MspR9I CCNGG 1 cut(s) 533
NciI CCSGG 1 cut(s) 533
NcoI CCATGG 2 cut(s) 292, 348
NdeII GATC 4 cut(s) 75, 117, 367, 486
NlaIII CATG 4 cut(s) 296, 319, 352, 796
NlaIV GGNNCC 9 cut(s) 88, 126, 354, 408, 530, 531, 633, 720, 814
NmuCI GTSAC 3 cut(s) 34, 40, 659
NspI RCATGY 1 cut(s) 796
PceI AGGCCT 1 cut(s) 847
PciI ACATGT 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PfeI GAWTC 6 cut(s) 130, 151, 360, 582, 749, 773
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 6 cut(s) 161, 171, 208, 257, 398, 746
PleI GAGTC 2 cut(s) 447, 618
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
PpsI GAGTC 2 cut(s) 447, 618
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 529
PspCI CACGTG 1 cut(s) 403
PspN4I GGNNCC 9 cut(s) 88, 126, 354, 408, 530, 531, 633, 720, 814
PspPI GGNCC 3 cut(s) 125, 406, 529
PspPPI RGGWCCY 1 cut(s) 529
PsuI RGATCY 2 cut(s) 117, 367
RsaI GTAC 2 cut(s) 308, 380
RsaNI GTAC 2 cut(s) 307, 379
SatI GCNGC 6 cut(s) 160, 170, 207, 256, 397, 745
Sau3AI GATC 4 cut(s) 75, 117, 367, 486
Sau96I GGNCC 3 cut(s) 125, 406, 529
SchI GAGTC 2 cut(s) 448, 619
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 2 cut(s) 357, 522
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 3 cut(s) 125, 406, 529
SmlI CTYRAG 2 cut(s) 302, 596
SmoI CTYRAG 2 cut(s) 302, 596
Sse9I AATT 6 cut(s) 54, 95, 245, 287, 734, 758
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 6 cut(s) 13, 157, 206, 375, 394, 397
StuI AGGCCT 1 cut(s) 847
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 2 cut(s) 292, 348
TaaI ACNGT 3 cut(s) 40, 325, 457
TaiI ACGT 2 cut(s) 36, 405
TaqI TCGA 4 cut(s) 60, 102, 499, 738
TasI AATT 6 cut(s) 54, 95, 245, 287, 734, 758
TauI GCSGC 2 cut(s) 209, 399
TfiI GAWTC 6 cut(s) 130, 151, 360, 582, 749, 773
TscAI CASTG 3 cut(s) 229, 460, 592
TseFI GTSAC 3 cut(s) 34, 40, 659
TseI GCWGC 4 cut(s) 159, 169, 255, 744
Tsp45I GTSAC 3 cut(s) 34, 40, 659
TspDTI ATGAA 2 cut(s) 822, 840
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 3 cut(s) 229, 460, 592
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 125, 406, 529
XapI RAATTY 2 cut(s) 95, 734
XceI RCATGY 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.