Rmu_sc0000998.1_g000023

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
Physical Location & Seq
Forward (+)
88348 .. 89388
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000023.1.cds

Sequence Viewer

Length: 1041 bp
atggccacctcgcttctcctctttctgattctcctctccctctcttcctccgccgtcgcttcctccgccaccctcctcgtcaccgccgcaaacaccctctccaactccggctacctctccatggccctcaccctccagctcgccgccagcgccggcctcaacttcgactctcccaccgccaccatcttcgctccgtcggacaccgccttcttccagtcgggcccaccctcgctgcctctgctccggtaccacatctcgccgcgacgattctcggtcaaaaccctaccctacctccaccgcggcaccaaaatccagactctgctcccgaattactcactcaccgtgacttcgtctccggccgtcgaaggctactcgtcggtcaacgacgttcgggtcgacccgaattcggttctggacgacgggtcggtgatcatatacgccgtcgatcggttctttaacttgactttcttggaggctgaagaagctccggcgccggctccgatcgctggaatttcgggtcaccggccgttcgggtcggttgcggatctgctgaggtccaaaggctgttcgatcatggccgcgtttcttgacgcccagctgatcgggttcaaccggaagacggcgctgacggtgttcgcagcggtcgacgacgccgtcgaagactacgcgaggaacagctccgattactcggagattttccggcagcacgtggtgccgaggctgctgacgtggcaagacctggtggcgcttgatgacgggacgatgctgccgacttttgaagaagggtttatgatccatgtgatcaagatgggtgacgtccctgtgctcaatgatgttccggtggccgatcaggacctctaccagagccgcttcctggttgttcatggcgtcaatcacttgctgacgtcacagaagcagatggtgaggcaagaagaagacccggttggagatcaagaagatggtggtgctggtttcactgatgggtttgttgccaatgttgctgatcagatcaaccctcaaggttttgatgactatcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

346

Amino Acids

37.41

Weight (kDa)

4.61

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 392, 653
AatII GACGTC 2 cut(s) 819, 908
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 4 cut(s) 246, 302, 490, 712
AccI GTMKAC 2 cut(s) 396, 645
AccII CGCG 4 cut(s) 262, 300, 581, 668
AclWI GGATC 2 cut(s) 552, 787
AcoI YGGCCR 5 cut(s) 3, 357, 524, 576, 843
AcsI RAATTY 2 cut(s) 403, 510
AcuI CTGAAG 1 cut(s) 498
AcvI CACGTG 1 cut(s) 709
AcyI GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
AdeI CACNNNGTG 1 cut(s) 712
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 6 cut(s) 121, 406, 447, 506, 619, 874
AgsI TTSAA 2 cut(s) 610, 779
AhdI GACNNNNNGTC 1 cut(s) 421
AjiI CACGTC 1 cut(s) 729
AjnI CCWGG 2 cut(s) 738, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 927, 959
AluBI AGCT 4 cut(s) 139, 485, 598, 678
AluI AGCT 4 cut(s) 139, 485, 598, 678
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 2 cut(s) 552, 787
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 8 cut(s) 3, 123, 154, 220, 357, 524, 576, 843
ApaI GGGCCC 1 cut(s) 224
ApeKI GCWGC 5 cut(s) 232, 638, 703, 721, 766
ApoI RAATTY 2 cut(s) 403, 510
Asp718I GGTACC 1 cut(s) 246
AspLEI GCGC 4 cut(s) 152, 493, 625, 748
AspS9I GGNCC 5 cut(s) 124, 220, 221, 555, 853
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 7 cut(s) 73, 121, 331, 439, 512, 824, 934
AvaII GGWCC 2 cut(s) 555, 853
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 4 cut(s) 246, 302, 490, 712
BanII GRGCYC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 623, 666, 942
Bbv12I GWGCWC 1 cut(s) 828
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 5 cut(s) 219, 650, 708, 715, 753
BccI CCATC 5 cut(s) 191, 802, 913, 953, 974
BceAI ACGGC 6 cut(s) 38, 344, 425, 511, 636, 638
BciT130I CCWGG 2 cut(s) 740, 875
BclI TGATCA 3 cut(s) 429, 801, 1003
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 1 cut(s) 357
BfoI RGCGCY 4 cut(s) 153, 494, 626, 749
Bme1390I CCNGG 3 cut(s) 740, 875, 941
Bme18I GGWCC 2 cut(s) 555, 853
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgBI CACGTC 1 cut(s) 729
BmgT120I GGNCC 5 cut(s) 124, 220, 221, 555, 853
BmiI GGNNCC 6 cut(s) 222, 248, 304, 492, 498, 714
BmrFI CCNGG 3 cut(s) 740, 875, 941
BmsI GCATC 1 cut(s) 753
BpiI GAAGAC 3 cut(s) 623, 666, 942
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 1002
BpuMI CCSGG 1 cut(s) 941
BsaAI YACGTR 1 cut(s) 709
BsaBI GATNNNNATC 1 cut(s) 1032
BsaHI GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
BsaJI CCNNGG 3 cut(s) 120, 298, 716
BsaWI WCCGGW 3 cut(s) 243, 612, 838
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 276, 306, 337, 367
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 406, 447, 506, 619, 874
Bse118I RCCGGY 3 cut(s) 152, 493, 522
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 1032
BseBI CCWGG 2 cut(s) 740, 875
BseDI CCNNGG 3 cut(s) 120, 298, 716
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 6 cut(s) 121, 406, 447, 506, 619, 874
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 3 cut(s) 8, 23, 65
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 2 cut(s) 357, 524
BseXI GCAGC 5 cut(s) 219, 650, 708, 715, 753
BseYI CCCAGC 1 cut(s) 594
Bsh1236I CGCG 4 cut(s) 262, 300, 581, 668
Bsh1285I CGRYCG 5 cut(s) 360, 448, 504, 527, 645
BshFI GGCC 8 cut(s) 5, 125, 156, 222, 359, 526, 578, 845
BshNI GGYRCC 4 cut(s) 246, 302, 490, 712
BsiEI CGRYCG 5 cut(s) 360, 448, 504, 527, 645
BsiHKAI GWGCWC 1 cut(s) 828
BslFI GGGAC 2 cut(s) 772, 803
BslI CCNNNNNNNGG 6 cut(s) 121, 406, 447, 506, 619, 874
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 772, 803
BsnI GGCC 8 cut(s) 5, 125, 156, 222, 359, 526, 578, 845
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 224, 828
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 8 cut(s) 5, 125, 156, 222, 359, 526, 578, 845
BspCNI CTCAG 1 cut(s) 543
BspFNI CGCG 4 cut(s) 262, 300, 581, 668
BspLI GGNNCC 6 cut(s) 222, 248, 304, 492, 498, 714
BspPI GGATC 2 cut(s) 552, 787
BspT107I GGYRCC 4 cut(s) 246, 302, 490, 712
BsrFI RCCGGY 3 cut(s) 152, 493, 522
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 3 cut(s) 152, 493, 522
BssECI CCNNGG 3 cut(s) 120, 298, 716
BssNI GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 740, 875
Bst4CI ACNGT 2 cut(s) 343, 631
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
BstAPI GCANNNNNTGC 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 709
BstC8I GCNNGC 4 cut(s) 141, 148, 154, 495
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 2 cut(s) 120, 298
BstEII GGTNACC 1 cut(s) 518
BstFNI CGCG 4 cut(s) 262, 300, 581, 668
BstH2I RGCGCY 4 cut(s) 153, 494, 626, 749
BstHHI GCGC 4 cut(s) 152, 493, 625, 748
BstMAI GTCTC 1 cut(s) 357
BstMCI CGRYCG 5 cut(s) 360, 448, 504, 527, 645
BstMWI GCNNNNNNNGC 9 cut(s) 65, 149, 238, 482, 503, 712, 721, 730, 998
BstNI CCWGG 2 cut(s) 740, 875
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 738, 873, 939
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 4 cut(s) 262, 300, 581, 668
BstV1I GCAGC 5 cut(s) 219, 650, 708, 715, 753
BstV2I GAAGAC 3 cut(s) 623, 666, 942
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZI CGGCCG 2 cut(s) 357, 524
BsuRI GGCC 8 cut(s) 5, 125, 156, 222, 359, 526, 578, 845
BtgI CCRYGG 2 cut(s) 120, 298
BtrI CACGTC 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 975, 1036
Cac8I GCNNGC 4 cut(s) 141, 148, 154, 495
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 4 cut(s) 152, 493, 625, 748
Cfr10I RCCGGY 3 cut(s) 152, 493, 522
Cfr13I GGNCC 5 cut(s) 124, 220, 221, 555, 853
Cfr42I CCGCGG 1 cut(s) 301
CseI GACGC 3 cut(s) 599, 659, 877
CsiI ACCWGGT 1 cut(s) 738
Csp6I GTAC 1 cut(s) 247
CviAII CATG 4 cut(s) 121, 574, 797, 884
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 551
DinI GGCGCC 1 cut(s) 492
DraIII CACNNNGTG 1 cut(s) 712
DrdI GACNNNNNNGTC 2 cut(s) 392, 653
DriI GACNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 2 cut(s) 392, 653
EaeI YGGCCR 5 cut(s) 3, 357, 524, 576, 843
EagI CGGCCG 2 cut(s) 357, 524
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 2 cut(s) 40, 55
EclXI CGGCCG 2 cut(s) 357, 524
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 555, 853
Eco52I CGGCCG 2 cut(s) 357, 524
Eco57I CTGAAG 1 cut(s) 498
Eco72I CACGTG 1 cut(s) 709
Eco91I GGTNACC 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 853
EcoO65I GGTNACC 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 738, 873
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 492
EheI GGCGCC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 4 cut(s) 124, 577, 800, 887
FaiI YATR 7 cut(s) 122, 434, 436, 575, 791, 798, 885
FaqI GGGAC 2 cut(s) 772, 803
FatI CATG 4 cut(s) 120, 573, 796, 883
FbaI TGATCA 3 cut(s) 429, 801, 1003
FblI GTMKAC 2 cut(s) 396, 645
FriOI GRGCYC 1 cut(s) 224
GlaI GCGC 4 cut(s) 151, 492, 624, 747
GsaI CCCAGC 1 cut(s) 598
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 4 cut(s) 153, 494, 626, 749
HaeIII GGCC 8 cut(s) 5, 125, 156, 222, 359, 526, 578, 845
HgaI GACGC 3 cut(s) 599, 659, 877
HhaI GCGC 4 cut(s) 152, 493, 625, 748
Hin1I GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
Hin1II CATG 4 cut(s) 124, 577, 800, 887
Hin6I GCGC 4 cut(s) 150, 491, 623, 746
HinP1I GCGC 4 cut(s) 150, 491, 623, 746
HincII GTYRAC 3 cut(s) 382, 397, 646
HindII GTYRAC 3 cut(s) 382, 397, 646
HinfI GANTC 4 cut(s) 28, 167, 267, 316
HphI GGTGA 7 cut(s) 73, 121, 331, 439, 512, 824, 934
Hpy166II GTNNAC 3 cut(s) 382, 397, 646
Hpy188I TCNGA 6 cut(s) 27, 199, 501, 682, 691, 1008
Hpy188III TCNNGA 7 cut(s) 313, 325, 413, 587, 805, 851, 953
Hpy8I GTNNAC 3 cut(s) 382, 397, 646
HpyAV CCTTC 3 cut(s) 217, 359, 776
HpyCH4III ACNGT 2 cut(s) 343, 631
HpyCH4IV ACGT 5 cut(s) 387, 708, 728, 816, 905
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 149, 238, 482, 503, 712, 721, 730, 998
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 5 cut(s) 387, 708, 728, 816, 905
Hsp92I GRCGYC 6 cut(s) 491, 591, 651, 816, 888, 905
Hsp92II CATG 4 cut(s) 124, 577, 800, 887
HspAI GCGC 4 cut(s) 150, 491, 623, 746
KasI GGCGCC 1 cut(s) 490
KpnI GGTACC 1 cut(s) 250
KroI GCCGGC 2 cut(s) 152, 493
KroNI GCCGGC 2 cut(s) 154, 495
Ksp22I TGATCA 3 cut(s) 429, 801, 1003
KspI CCGCGG 1 cut(s) 301
LmnI GCTCC 6 cut(s) 196, 246, 327, 490, 502, 683
Lsp1109I GCAGC 5 cut(s) 219, 650, 708, 715, 753
LweI GCATC 1 cut(s) 753
MabI ACCWGGT 1 cut(s) 738
MaeII ACGT 5 cut(s) 387, 708, 728, 816, 905
MaeIII GTNAC 5 cut(s) 79, 343, 518, 812, 906
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 224, 828
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 328, 403, 510
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 491
MlyI GAGTC 2 cut(s) 161, 310
MmeI TCCRAC 3 cut(s) 126, 177, 925
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 2 cut(s) 152, 493
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 300, 598, 641
MspR9I CCNGG 3 cut(s) 740, 875, 941
MvaI CCWGG 2 cut(s) 740, 875
MvnI CGCG 4 cut(s) 262, 300, 581, 668
MwoI GCNNNNNNNGC 9 cut(s) 65, 149, 238, 482, 503, 712, 721, 730, 998
NaeI GCCGGC 2 cut(s) 154, 495
NarI GGCGCC 1 cut(s) 491
NciI CCSGG 1 cut(s) 941
NcoI CCATGG 1 cut(s) 120
NgoMIV GCCGGC 2 cut(s) 152, 493
NlaIII CATG 4 cut(s) 124, 577, 800, 887
NlaIV GGNNCC 6 cut(s) 222, 248, 304, 492, 498, 714
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 5 cut(s) 79, 343, 518, 812, 906
PcsI WCGNNNNNNNCGW 5 cut(s) 393, 642, 651, 654, 767
PdiI GCCGGC 2 cut(s) 154, 495
PfeI GAWTC 2 cut(s) 28, 267
PflFI GACNNNGTC 2 cut(s) 349, 653
Ple19I CGATCG 2 cut(s) 448, 504
PleI GAGTC 2 cut(s) 161, 310
PluTI GGCGCC 1 cut(s) 494
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
PpsI GAGTC 2 cut(s) 161, 310
Ppu21I YACGTR 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 853
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 2 cut(s) 738, 873
PspCI CACGTG 1 cut(s) 709
PspEI GGTNACC 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 2 cut(s) 738, 873
PspN4I GGNNCC 6 cut(s) 222, 248, 304, 492, 498, 714
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 5 cut(s) 124, 220, 221, 555, 853
PspPPI RGGWCCY 1 cut(s) 853
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 544
PsyI GACNNNGTC 2 cut(s) 349, 653
PvuI CGATCG 2 cut(s) 448, 504
PvuII CAGCTG 1 cut(s) 598
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacII CCGCGG 1 cut(s) 301
SalI GTCGAC 2 cut(s) 395, 644
SaqAI TTAA 1 cut(s) 456
Sau96I GGNCC 5 cut(s) 124, 220, 221, 555, 853
SchI GAGTC 2 cut(s) 161, 310
ScrFI CCNGG 3 cut(s) 740, 875, 941
SduI GDGCHC 2 cut(s) 224, 828
SexAI ACCWGGT 1 cut(s) 738
SfaNI GCATC 1 cut(s) 753
SfoI GGCGCC 1 cut(s) 492
Sfr303I CCGCGG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 2 cut(s) 555, 853
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
Sse9I AATT 3 cut(s) 328, 403, 510
SspDI GGCGCC 1 cut(s) 490
StyD4I CCNGG 3 cut(s) 738, 873, 939
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 343, 631
TaiI ACGT 5 cut(s) 390, 711, 731, 819, 908
TaqI TCGA 7 cut(s) 165, 363, 396, 444, 569, 645, 657
TaqII GACCGA 2 cut(s) 262, 367
TasI AATT 3 cut(s) 328, 403, 510
TauI GCSGC 6 cut(s) 89, 146, 262, 303, 581, 870
TfiI GAWTC 2 cut(s) 28, 267
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 5 cut(s) 79, 343, 518, 812, 906
TseI GCWGC 5 cut(s) 232, 638, 703, 721, 766
Tsp45I GTSAC 5 cut(s) 79, 343, 518, 812, 906
TspDTI ATGAA 1 cut(s) 872
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 982
Tth111I GACNNNGTC 2 cut(s) 349, 653
VpaK11BI GGWCC 2 cut(s) 555, 853
XapI RAATTY 2 cut(s) 403, 510
XmiI GTMKAC 2 cut(s) 396, 645
ZraI GACGTC 2 cut(s) 817, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.