Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030017

Physical Location & Seq

Genomic Coordinates Forward (+)

40048965 .. 40049475

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGGTTGACTTTCGGCGGCCTGAGGTGCTACTGGTCAAGAGGGTCCGTGAATTTGGGGCACGGAAAAAGACTTTAGAGGATATGGCAGATTTTAGGTTGAATGGAGTGTACAATCAGAAGGAACTGTTGAGACTGTTTAAACTAGGAATTGCTTGTACACGCTCCAATCCTCAACTGAGACCGAGCATGAGGCAGCTTGTAAGGATACTTGATGGGAATGACAAATGCTTGACGGAAATATGCAAAAAGGACGAAAGTGGGGAAGAATGGAGACAAGTGAATGATTCTGCTTTGTCGCTAATTAAGAGGATCCAAGCTCTAGGAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

9.72

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030017)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415371
rosa_samantha	Rh4BG192900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 19
AclWI	GGATC	2 cut(s)	307, 320
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	2 cut(s)	113, 160
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	2 cut(s)	199, 320
AluI	AGCT	2 cut(s)	199, 320
Alw26I	GTCTC	3 cut(s)	127, 175, 268
AlwI	GGATC	2 cut(s)	307, 320
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	3 cut(s)	127, 175, 268
BfaI	CTAG	2 cut(s)	146, 323
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	2 cut(s)	20, 197
BlsI	GCNGC	2 cut(s)	21, 198
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	47, 314
BsaI	GGTCTC	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	39
Bse21I	CCTNAGG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	15, 170
BseNI	ACTGG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	127, 175, 268
BsnI	GGCC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp1407I	TGTACA	2 cut(s)	111, 158
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	5, 19
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	16, 171
BspLI	GGNNCC	2 cut(s)	47, 314
BspPI	GGATC	2 cut(s)	307, 320
BspTNI	GGTCTC	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	111, 158
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	129, 138
BstAUI	TGTACA	2 cut(s)	111, 158
BstDEI	CTNAG	2 cut(s)	24, 179
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	127, 175, 268
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	112, 159
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	3 cut(s)	22, 199, 320
CviKI_1	RGCY	3 cut(s)	22, 199, 320
CviQI	GTAC	2 cut(s)	112, 159
DdeI	CTNAG	2 cut(s)	24, 179
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraI	TTTAAA	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	86, 191, 244
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	20, 197
Fsp4HI	GCNGC	2 cut(s)	20, 197
FspBI	CTAG	2 cut(s)	146, 323
GluI	GCNGC	2 cut(s)	20, 197
HaeIII	GGCC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	3 cut(s)	10, 112, 161
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	3 cut(s)	10, 112, 161
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	129, 138
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	24, 179
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	2 cut(s)	20, 36
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	146, 323
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	53, 150, 303
MnlI	CCTC	6 cut(s)	19, 36, 73, 183, 186, 303
MseI	TTAA	2 cut(s)	141, 306
MssI	GTTTAAAC	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	47, 314
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	21, 198
PmeI	GTTTAAAC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	47, 314
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	2 cut(s)	113, 160
RsaNI	GTAC	2 cut(s)	112, 159
SaqAI	TTAA	2 cut(s)	141, 306
SatI	GCNGC	2 cut(s)	20, 197
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	4 cut(s)	30, 101, 201, 322
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	53, 150, 303
SsiI	CCGC	2 cut(s)	5, 19
SspMI	CTAG	2 cut(s)	146, 323
TaaI	ACNGT	2 cut(s)	129, 138
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	3 cut(s)	53, 150, 303
TatI	WGTACW	2 cut(s)	111, 158
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	141, 306
Tru9I	TTAA	2 cut(s)	141, 306
TseI	GCWGC	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	38, 79, 251
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	2 cut(s)	146, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.