Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0030017

Physical Location & Seq

Genomic Coordinates Forward (+)

33286007 .. 33286546

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAACCCAAGGCTCAGTTCTTTCGCCCTTGCTGAATTCTTGACACGGAACGACCATGGGCACCATGCAGTTACTGACACAAGCAAATCTGCTCGAGGGATTTTTGGTTACATGTCACCTGAATGTATGGAATCTGGAGAAGCAACCACCGTGACTGACATATACAGCTTTGGTGTAGTAATACTTGAGGTTATAACTGGACAGATGGCAGTTGACTTTCGGCGGCCTGAGGTGCTACTGGTCAAGAGGGTCCGTGAATTTGGGGCACGGAAAAAGACTTTAGAGGATATGGCAGATTTTAGGTTGAATGGAGTGTACAATCAGAAGGAACTGTTGAGACTGTTTAAACTAGGAATTGCTTGTACACGCTCCAATCCTCAACTGAGACCGAGCCTGAGGCAGATTGTAAGGATACTTGATGGGAATGACAAATGCTTGACGGAAATATGCAAACAGGACGAAAGTGGGGAAGAATGGAGACGAGTGAATGATTCTGCTTTGTCGCTAATTAAGAGGATCCAAGCTCTAGGAATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

20.28

Weight (kDa)

8.73

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 136	3.5e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 139	2.5e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0030017)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415371
rosa_samantha	Rh4BG192900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	511, 524
AcsI	RAATTY	2 cut(s)	35, 257
AfaI	GTAC	2 cut(s)	317, 364
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	168, 524
AluI	AGCT	2 cut(s)	168, 524
Alw26I	GTCTC	3 cut(s)	331, 379, 472
AlwI	GGATC	2 cut(s)	511, 524
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	35, 257
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	250
AxyI	CCTNAGG	2 cut(s)	228, 395
BaeGI	GKGCMC	2 cut(s)	63, 268
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	60
BccI	CCATC	2 cut(s)	199, 413
BciVI	GTATCC	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	331, 379, 472
BfaI	CTAG	2 cut(s)	350, 527
BfuI	GTATCC	1 cut(s)	405
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	3 cut(s)	62, 251, 518
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	8, 55
Bse1I	ACTGG	2 cut(s)	202, 243
Bse21I	CCTNAGG	2 cut(s)	228, 395
BseDI	CCNNGG	2 cut(s)	8, 55
BseMII	CTCAG	4 cut(s)	28, 219, 374, 386
BseNI	ACTGG	2 cut(s)	202, 243
BseSI	GKGCMC	2 cut(s)	63, 268
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	93
BsmAI	GTCTC	3 cut(s)	331, 379, 472
BsmBI	CGTCTC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	63, 268
Bsp1407I	TGTACA	2 cut(s)	315, 362
Bsp143I	GATC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	4 cut(s)	27, 220, 375, 387
BspLI	GGNNCC	3 cut(s)	62, 251, 518
BspPI	GGATC	2 cut(s)	511, 524
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	379
BsrGI	TGTACA	2 cut(s)	315, 362
BsrI	ACTGG	2 cut(s)	202, 243
BssECI	CCNNGG	2 cut(s)	8, 55
BssMI	GATC	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	8, 55
Bst4CI	ACNGT	3 cut(s)	151, 333, 342
BstAUI	TGTACA	2 cut(s)	315, 362
BstDEI	CTNAG	4 cut(s)	14, 228, 383, 395
BstDSI	CCRYGG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	519
BstMAI	GTCTC	3 cut(s)	331, 379, 472
BstMBI	GATC	1 cut(s)	516
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	115
BstSLI	GKGCMC	2 cut(s)	63, 268
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
Bsu36I	CCTNAGG	2 cut(s)	228, 395
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	316, 363
CviAII	CATG	3 cut(s)	56, 65, 112
CviJI	RGCY	5 cut(s)	13, 168, 226, 393, 524
CviKI_1	RGCY	5 cut(s)	13, 168, 226, 393, 524
CviQI	GTAC	2 cut(s)	316, 363
DdeI	CTNAG	4 cut(s)	14, 228, 383, 395
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
DraI	TTTAAA	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	8, 55
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	250
Eco81I	CCTNAGG	2 cut(s)	228, 395
Eco88I	CYCGRG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	8, 55
ErhI	CCWWGG	2 cut(s)	8, 55
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	3 cut(s)	59, 68, 115
FaiI	YATR	9 cut(s)	57, 66, 113, 128, 161, 163, 194, 290, 448
FatI	CATG	3 cut(s)	55, 64, 111
Fnu4HI	GCNGC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	350, 527
GluI	GCNGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	59, 68, 115
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	131, 491
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	3 cut(s)	214, 316, 365
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	3 cut(s)	40, 135, 244
Hpy8I	GTNNAC	3 cut(s)	214, 316, 365
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	3 cut(s)	151, 333, 342
HpyCH4V	TGCA	2 cut(s)	68, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	4 cut(s)	14, 228, 383, 395
Hsp92II	CATG	3 cut(s)	59, 68, 115
Kzo9I	GATC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	7 cut(s)	120, 132, 183, 224, 240, 407, 440
MaeI	CTAG	2 cut(s)	350, 527
MaeIII	GTNAC	4 cut(s)	70, 107, 114, 151
MalI	GATC	1 cut(s)	518
MboI	GATC	1 cut(s)	516
MboII	GAAGA	1 cut(s)	482
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	63, 268
MluCI	AATT	4 cut(s)	35, 257, 354, 507
MnlI	CCTC	8 cut(s)	89, 181, 223, 240, 277, 387, 390, 507
MseI	TTAA	2 cut(s)	345, 510
MslI	CAYNNNNRTG	1 cut(s)	121
MssI	GTTTAAAC	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	1 cut(s)	516
NlaIII	CATG	3 cut(s)	59, 68, 115
NlaIV	GGNNCC	3 cut(s)	62, 251, 518
NmuCI	GTSAC	2 cut(s)	114, 151
NspI	RCATGY	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	93
PciI	ACATGT	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	131, 491
PkrI	GCNGC	1 cut(s)	225
PmeI	GTTTAAAC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	62, 251, 518
PspPI	GGNCC	1 cut(s)	250
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	2 cut(s)	317, 364
RsaNI	GTAC	2 cut(s)	316, 363
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	345, 510
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	63, 268
SetI	ASST	6 cut(s)	121, 170, 192, 234, 305, 526
Sfr274I	CTCGAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	121
SmlI	CTYRAG	2 cut(s)	93, 185
SmoI	CTYRAG	2 cut(s)	93, 185
Sse9I	AATT	4 cut(s)	35, 257, 354, 507
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	350, 527
StyI	CCWWGG	2 cut(s)	8, 55
TaaI	ACNGT	3 cut(s)	151, 333, 342
TaqI	TCGA	1 cut(s)	94
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	4 cut(s)	35, 257, 354, 507
TatI	WGTACW	2 cut(s)	315, 362
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	131, 491
Tru1I	TTAA	2 cut(s)	345, 510
Tru9I	TTAA	2 cut(s)	345, 510
TseFI	GTSAC	2 cut(s)	114, 151
Tsp45I	GTSAC	2 cut(s)	114, 151
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	61, 242, 283, 455
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	2 cut(s)	35, 257
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	93
XspI	CTAG	2 cut(s)	350, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.