RchiOBHm_Chr4g0418711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030114
Physical Location & Seq
Forward (+)
44159748 .. 44160083
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38869

Sequence Viewer

Length: 336 bp
ATGTTTCTCTTTTTTATTTTCTTTTCTCTCTTTTTTGTCTTCTGCTTATCCATTTCTCTTCCTTCGTTCTCTCTCTTCTCCTCCACCTCCATCTTCATCACGAGCTCTATTGTTCAGAGCCTCCATAAGAGAATGCCCGCAAACCAGGGCGCCCTACCTGTCTCCCAGGCCTCCGGCCTCGACCAGGCTTCGGGTCTCCGGCGAAGGCTCTCATCCCTCTTCCTCAAGTTCCAGCCCATCTCCTCCCCGGCCACCACCTGGGCCCTGCAGCGGTCCAAGTCGGTCTCCTCCAAGGGCGAGTACGCCGCCATTAAGAGATGGTGGGACTGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

11.0

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030114)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0418711
rosa_laevigata RLG00000018207

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 3 cut(s) 138, 271, 306
AcoI YGGCCR 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 184, 190, 258, 270
AjnI CCWGG 4 cut(s) 144, 165, 183, 257
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 3 cut(s) 166, 200, 289
AoxI GGCC 4 cut(s) 168, 175, 249, 261
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 261, 262, 273
AsuC2I CCSGG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 107, 265
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 280
BccI CCATC 3 cut(s) 98, 245, 312
BciT130I CCWGG 4 cut(s) 146, 167, 185, 259
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 166, 200, 289
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 2 cut(s) 269, 306
BlsI GCNGC 2 cut(s) 270, 307
Bme1390I CCNGG 5 cut(s) 146, 167, 185, 248, 259
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 261, 262, 273
BmiI GGNNCC 2 cut(s) 151, 263
BmrFI CCNGG 5 cut(s) 146, 167, 185, 248, 259
BpiI GAAGAC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 200, 289
BsaJI CCNNGG 5 cut(s) 145, 165, 246, 258, 291
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 190, 258, 270
Bse1I ACTGG 1 cut(s) 332
BseBI CCWGG 4 cut(s) 146, 167, 185, 259
BseDI CCNNGG 5 cut(s) 145, 165, 246, 258, 291
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 4 cut(s) 184, 190, 258, 270
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 3 cut(s) 70, 232, 277
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 4 cut(s) 170, 177, 251, 263
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 3 cut(s) 174, 199, 248
BslI CCNNNNNNNGG 4 cut(s) 184, 190, 258, 270
BsmAI GTCTC 3 cut(s) 166, 200, 289
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 4 cut(s) 170, 177, 251, 263
Bso31I GGTCTC 2 cut(s) 200, 289
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 107, 265
BspACI CCGC 3 cut(s) 138, 271, 306
BspANI GGCC 4 cut(s) 170, 177, 251, 263
BspLI GGNNCC 2 cut(s) 151, 263
BspMAI CTGCAG 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 149
BspTNI GGTCTC 2 cut(s) 200, 289
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 5 cut(s) 145, 165, 246, 258, 291
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 4 cut(s) 146, 167, 185, 259
Bst6I CTCTTC 3 cut(s) 63, 80, 224
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 3 cut(s) 166, 200, 289
BstNI CCWGG 4 cut(s) 146, 167, 185, 259
BstSCI CCNGG 5 cut(s) 144, 165, 183, 246, 257
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 4 cut(s) 170, 177, 251, 263
BtsCI GGATG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 261, 262, 273
Csp6I GTAC 1 cut(s) 301
CviJI RGCY 9 cut(s) 105, 120, 170, 177, 188, 208, 235, 251, 263
CviKI_1 RGCY 9 cut(s) 105, 120, 170, 177, 188, 208, 235, 251, 263
CviQI GTAC 1 cut(s) 301
DinI GGCGCC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 63, 80, 224
EarI CTCTTC 3 cut(s) 63, 80, 224
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 2 cut(s) 107, 265
Eco31I GGTCTC 2 cut(s) 200, 289
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 4 cut(s) 144, 165, 183, 257
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 107, 265
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 291
FaiI YATR 1 cut(s) 126
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 269, 306
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 107, 265
Fsp4HI GCNGC 2 cut(s) 269, 306
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 269, 306
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 170, 177, 251, 263
HapII CCGG 3 cut(s) 174, 199, 248
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HpaII CCGG 3 cut(s) 174, 199, 248
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 72, 198
HpyCH4V TGCA 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 280
MboII GAAGA 5 cut(s) 31, 50, 67, 85, 211
MhlI GDGCHC 2 cut(s) 107, 265
Mly113I GGCGCC 1 cut(s) 150
MnlI CCTC 9 cut(s) 91, 97, 131, 181, 188, 227, 233, 253, 298
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 3 cut(s) 174, 199, 248
MspR9I CCNGG 5 cut(s) 146, 167, 185, 248, 259
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 4 cut(s) 146, 167, 185, 259
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 151, 263
PceI AGGCCT 1 cut(s) 170
PctI GAATGC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 2 cut(s) 270, 307
PluTI GGCGCC 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 4 cut(s) 144, 165, 183, 257
PspGI CCWGG 4 cut(s) 144, 165, 183, 257
PspN4I GGNNCC 2 cut(s) 151, 263
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 261, 262, 273
PstI CTGCAG 1 cut(s) 270
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 269, 306
Sau96I GGNCC 3 cut(s) 261, 262, 273
ScrFI CCNGG 5 cut(s) 146, 167, 185, 248, 259
SduI GDGCHC 2 cut(s) 107, 265
SetI ASST 4 cut(s) 89, 107, 160, 260
SfcI CTRYAG 1 cut(s) 266
SfoI GGCGCC 1 cut(s) 151
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 3 cut(s) 138, 271, 306
SspDI GGCGCC 1 cut(s) 149
SstI GAGCTC 1 cut(s) 107
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 144, 165, 183, 246, 257
StyI CCWWGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 180
TaqII GACCGA 1 cut(s) 271
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.