RLG00000018207

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0030114
Physical Location & Seq
Reverse (-)
26877656 .. 26878329
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018207

Sequence Viewer

Length: 306 bp
ATGCCCGCAAACCAGGGCGCCCTACCCGTCTCCCAGGGCTCCGGCCTCGACCAGGCTTTGGCTCTCTGGAAAAGGCTCTCGTCCCTCTCCCTTAAGTTCCAGCCCATCTCCTCCCCGGCCACCACCTGGGCCTTGCAGCGGTCCAAGTCGGTCTCCGCCATGGGCGAGTACGCCGCCATTAAGAGATGGTTCTTTTGGATTGGGTCTCAATTTGAGTTTGGGGTAATGGTGTTTCTCGGAGAGCCTGCAGTACTATTGGAGGAGAAATTTGTTTGCAGAAGTGGAAATCAAAAGCGCTACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

9.62

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030114)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0418711
rosa_laevigata RLG00000018207

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 2 cut(s) 58, 126
AciI CCGC 4 cut(s) 6, 139, 156, 174
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 170, 252
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 4 cut(s) 52, 58, 126, 138
AflII CTTAAG 1 cut(s) 92
AjnI CCWGG 4 cut(s) 12, 33, 51, 125
Alw26I GTCTC 3 cut(s) 34, 157, 210
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 3 cut(s) 43, 117, 129
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 2 cut(s) 20, 297
AspS9I GGNCC 2 cut(s) 129, 141
AsuC2I CCSGG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 113, 180
BciT130I CCWGG 4 cut(s) 14, 35, 53, 127
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 34, 157, 210
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 2 cut(s) 21, 298
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 2 cut(s) 137, 174
BlsI GCNGC 2 cut(s) 138, 175
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 5 cut(s) 14, 35, 53, 116, 127
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 129, 141
BmiI GGNNCC 2 cut(s) 19, 40
BmrFI CCNGG 5 cut(s) 14, 35, 53, 116, 127
BpuMI CCSGG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 157, 210
BsaJI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 58, 126, 138
BseBI CCWGG 4 cut(s) 14, 35, 53, 127
BseDI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
BseLI CCNNNNNNNGG 4 cut(s) 52, 58, 126, 138
BseRI GAGGAG 2 cut(s) 100, 275
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 45, 119, 131
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 42, 116
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 4 cut(s) 52, 58, 126, 138
BsmAI GTCTC 3 cut(s) 34, 157, 210
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 45, 119, 131
Bso31I GGTCTC 2 cut(s) 157, 210
Bsp1286I GDGCHC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 4 cut(s) 6, 139, 156, 174
BspANI GGCC 3 cut(s) 45, 119, 131
BspLI GGNNCC 2 cut(s) 19, 40
BspMAI CTGCAG 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 2 cut(s) 157, 210
BssECI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 4 cut(s) 14, 35, 53, 127
Bst4CI ACNGT 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 6, 246
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 21, 298
BstHHI GCGC 2 cut(s) 20, 297
BstMAI GTCTC 3 cut(s) 34, 157, 210
BstNI CCWGG 4 cut(s) 14, 35, 53, 127
BstSCI CCNGG 5 cut(s) 12, 33, 51, 114, 125
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 45, 119, 131
BtgI CCRYGG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 6, 246
CfoI GCGC 2 cut(s) 20, 297
Cfr13I GGNCC 2 cut(s) 129, 141
Csp6I GTAC 2 cut(s) 169, 251
CviAII CATG 1 cut(s) 160
CviJI RGCY 9 cut(s) 39, 45, 56, 62, 76, 103, 119, 131, 244
CviKI_1 RGCY 9 cut(s) 39, 45, 56, 62, 76, 103, 119, 131, 244
CviQI GTAC 2 cut(s) 169, 251
DinI GGCGCC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 117
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 2 cut(s) 157, 210
Eco47I GGWCC 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRII CCWGG 4 cut(s) 12, 33, 51, 125
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 163
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 137, 174
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 137, 174
GlaI GCGC 2 cut(s) 19, 296
GluI GCNGC 2 cut(s) 137, 174
HaeII RGCGCY 2 cut(s) 21, 298
HaeIII GGCC 3 cut(s) 45, 119, 131
HapII CCGG 2 cut(s) 42, 116
HhaI GCGC 2 cut(s) 20, 297
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 2 cut(s) 18, 295
HinP1I GCGC 2 cut(s) 18, 295
HpaII CCGG 2 cut(s) 42, 116
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 3 cut(s) 136, 248, 276
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 2 cut(s) 18, 295
KasI GGCGCC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 209, 266
Mly113I GGCGCC 1 cut(s) 18
MnlI CCTC 4 cut(s) 56, 95, 121, 253
MseI TTAA 2 cut(s) 93, 180
MspA1I CMGCKG 1 cut(s) 139
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 42, 116
MspR9I CCNGG 5 cut(s) 14, 35, 53, 116, 127
MvaI CCWGG 4 cut(s) 14, 35, 53, 127
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 19, 40
PasI CCCWGGG 1 cut(s) 34
PflMI CCANNNNNTGG 2 cut(s) 58, 126
PkrI GCNGC 2 cut(s) 138, 175
PluTI GGCGCC 1 cut(s) 21
Psp6I CCWGG 4 cut(s) 12, 33, 51, 125
PspGI CCWGG 4 cut(s) 12, 33, 51, 125
PspN4I GGNNCC 2 cut(s) 19, 40
PspPI GGNCC 2 cut(s) 129, 141
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 2 cut(s) 170, 252
RsaNI GTAC 2 cut(s) 169, 251
SaqAI TTAA 2 cut(s) 93, 180
SatI GCNGC 2 cut(s) 137, 174
Sau96I GGNCC 2 cut(s) 129, 141
ScaI AGTACT 1 cut(s) 252
ScrFI CCNGG 5 cut(s) 14, 35, 53, 116, 127
SduI GDGCHC 1 cut(s) 41
SetI ASST 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 246
SfoI GGCGCC 1 cut(s) 19
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 209, 266
SsiI CCGC 4 cut(s) 6, 139, 156, 174
SspDI GGCGCC 1 cut(s) 17
StyD4I CCNGG 5 cut(s) 12, 33, 51, 114, 125
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 48
TaqII GACCGA 1 cut(s) 139
TasI AATT 2 cut(s) 209, 266
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 93, 180
Tru9I TTAA 2 cut(s) 93, 180
TseI GCWGC 1 cut(s) 136
Van91I CCANNNNNTGG 2 cut(s) 58, 126
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.