Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030045

Physical Location & Seq

Genomic Coordinates Forward (+)

44253396 .. 44254585

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCAAATGCGGCTCCATTTCCGGCGCCGAATCGTTGTTCCGCTTGTTCTGAGCCGGACCCGGTTTCCTGTAATATCATGGTTGCTGGGTATGTGAAATCTGTTGACTTGGACAATGCACGCCAGATGTTTGATAAAATGCCTATGAGAGGTTGTGGATATGAGGAATGCCGGTGTGATGCCGAATCAGCTGATATCAAACTCAATTCAATAACATTCATCGGAGCCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGAGAGAGGTATTTTAAGAGCATTATGGTTGAAAAGAATGTATACCACATTCAACCAAACATTAAGGATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCACATTATTGGCCGCAAGTACAACACAAGGGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

6.04

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030045)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418771 RchiOBHm_Chr4g0418891

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	3 cut(s)	11, 42, 377
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	149, 270
AgsI	TTSAA	3 cut(s)	210, 296, 317
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	2 cut(s)	261, 374
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	62
BfaI	CTAG	1 cut(s)	400
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	2 cut(s)	12, 377
BlsI	GCNGC	2 cut(s)	13, 378
Bme1390I	CCNGG	2 cut(s)	62, 356
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	4 cut(s)	15, 27, 60, 226
BmrFI	CCNGG	2 cut(s)	62, 356
BmsI	GCATC	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 270
Bse118I	RCCGGY	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	149, 270
BseMII	CTCAG	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	263, 376
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	5 cut(s)	23, 56, 62, 172, 264
BslI	CCNNNNNNNGG	2 cut(s)	149, 270
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	263, 376
Bsp1286I	GDGCHC	2 cut(s)	229, 367
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	3 cut(s)	11, 42, 377
BspANI	GGCC	2 cut(s)	263, 376
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	4 cut(s)	15, 27, 60, 226
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	349
BssNAI	GTATAC	1 cut(s)	307
BssNI	GRCGYC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	51, 230
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 233
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	60, 354
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	263, 376
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	6 cut(s)	14, 55, 191, 227, 263, 376
CviKI_1	RGCY	6 cut(s)	14, 55, 191, 227, 263, 376
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	2 cut(s)	51, 230
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
FaeI	CATG	1 cut(s)	82
FaiI	YATR	8 cut(s)	80, 93, 146, 162, 290, 307, 336, 344
FatI	CATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	12, 377
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	12, 377
FspBI	CTAG	1 cut(s)	400
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	12, 377
GsaI	CCCAGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	263, 376
HapII	CCGG	5 cut(s)	23, 56, 62, 172, 264
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	31, 185, 396
HpaII	CCGG	5 cut(s)	23, 56, 62, 172, 264
Hpy166II	GTNNAC	2 cut(s)	106, 307
Hpy188I	TCNGA	2 cut(s)	52, 224
Hpy8I	GTNNAC	2 cut(s)	106, 307
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 233
HpyF3I	CTNAG	2 cut(s)	51, 230
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	26
KasI	GGCGCC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	19, 224
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	400
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	229, 367
MluCI	AATT	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	143, 157, 253, 264
MseI	TTAA	2 cut(s)	279, 327
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	5 cut(s)	23, 56, 62, 172, 264
MspR9I	CCNGG	2 cut(s)	62, 356
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	188, 233
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	15, 27, 60, 226
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	31, 185, 396
PkrI	GCNGC	2 cut(s)	13, 378
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	4 cut(s)	15, 27, 60, 226
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	279, 327
SatI	GCNGC	2 cut(s)	12, 377
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	62, 356
SduI	GDGCHC	2 cut(s)	229, 367
SetI	ASST	3 cut(s)	154, 193, 275
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	11, 42, 377
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	2 cut(s)	60, 354
TasI	AATT	1 cut(s)	205
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	2 cut(s)	14, 379
TfiI	GAWTC	3 cut(s)	31, 185, 396
Tru1I	TTAA	2 cut(s)	279, 327
Tru9I	TTAA	2 cut(s)	279, 327
TspDTI	ATGAA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.