Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030045

Physical Location & Seq

Genomic Coordinates Forward (+)

44365788 .. 44369957

Gene Structure 4170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTGCTCCATTTCCGGAGCTCTTGTTCTGAGCCGGACCCGGTTTCCTGTAATATCATGGTTGCTGGGTATGTGAAATCTGGTGACTTGGACAATGCACGCCAGATGTTTGATAAAATGCCTATGAGAGGTTGTGGATATGAGGAATGCCGGTGTGATGCCGAATCAGCTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGAGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGTCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAAATCTAGAAATAGGAGAAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

8.38

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	12 - 45	5e-07	PPR repeat family
PPR	PF01535	15 - 45	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030045)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418771 RchiOBHm_Chr4g0418891

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	2 cut(s)	337, 414
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	2 cut(s)	128, 249
AgsI	TTSAA	2 cut(s)	189, 287
AjnI	CCWGG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	3 cut(s)	21, 170, 335
AluI	AGCT	3 cut(s)	21, 170, 335
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	3 cut(s)	240, 337, 414
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	2 cut(s)	5, 417
BlsI	GCNGC	2 cut(s)	6, 418
Bme1390I	CCNGG	2 cut(s)	41, 326
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	41, 326
BmsI	GCATC	2 cut(s)	148, 340
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 249
Bse118I	RCCGGY	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	128, 249
BseMII	CTCAG	2 cut(s)	21, 345
BseSI	GKGCMC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	3 cut(s)	242, 339, 416
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	16, 35, 41, 151, 243
BslI	CCNNNNNNNGG	2 cut(s)	128, 249
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	242, 339, 416
Bsp1286I	GDGCHC	2 cut(s)	23, 407
Bsp13I	TCCGGA	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	422
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	242, 339, 416
BspCNI	CTCAG	2 cut(s)	22, 346
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	319
BssNAI	GTATAC	1 cut(s)	277
Bst1107I	GTATAC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	100, 337
BstDEI	CTNAG	3 cut(s)	30, 209, 354
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	376, 423
BstSCI	CCNGG	2 cut(s)	39, 324
BstSLI	GKGCMC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	242, 339, 416
Cac8I	GCNNGC	2 cut(s)	100, 337
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	6 cut(s)	58, 265, 373, 379, 420, 431
CviJI	RGCY	9 cut(s)	21, 34, 170, 242, 335, 339, 386, 416, 459
CviKI_1	RGCY	9 cut(s)	21, 34, 170, 242, 335, 339, 386, 416, 459
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	3 cut(s)	30, 209, 354
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	2 cut(s)	337, 414
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	6 cut(s)	61, 268, 376, 382, 423, 434
FatI	CATG	6 cut(s)	57, 264, 372, 378, 419, 430
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	5, 417
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	5, 417
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	5, 417
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	242, 339, 416
HapII	CCGG	5 cut(s)	16, 35, 41, 151, 243
Hin1II	CATG	6 cut(s)	61, 268, 376, 382, 423, 434
HinfI	GANTC	2 cut(s)	164, 204
HpaII	CCGG	5 cut(s)	16, 35, 41, 151, 243
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	31, 203
Hpy188III	TCNNGA	2 cut(s)	16, 441
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	376
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	30, 209, 354
Hsp92II	CATG	6 cut(s)	61, 268, 376, 382, 423, 434
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	12, 18
LweI	GCATC	2 cut(s)	148, 340
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	280, 359
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	23, 407
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	122, 136, 232, 243
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	2 cut(s)	258, 297
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	5 cut(s)	16, 35, 41, 151, 243
MspR9I	CCNGG	2 cut(s)	41, 326
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	6 cut(s)	61, 268, 376, 382, 423, 434
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	2 cut(s)	376, 423
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	6, 418
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	258, 297
SatI	GCNGC	2 cut(s)	5, 417
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	41, 326
SduI	GDGCHC	2 cut(s)	23, 407
SetI	ASST	5 cut(s)	23, 133, 172, 254, 337
SfaNI	GCATC	2 cut(s)	148, 340
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	39, 324
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	258, 297
Tru9I	TTAA	2 cut(s)	258, 297
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	187, 281, 395
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	126
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	2 cut(s)	376, 423
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.