RchiOBHm_Chr4g0424981

tetraacyldisaccharide

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
50597715 .. 50600948
3234 bp
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UTR
Exon/CDS
Intron
PRQ39422

Sequence Viewer

Length: 369 bp
ATGTACTTTTTGGAGTTTTCCATGAAGCTTTATATATGTGCTTTTCTGCTGAGTATCTCATGTCCAAATGGTAATGATTATCTGCAGATTGGAGCATTTTTTGTTTATCGGCTTGAATTCAGTGACCACCACAAATTTCTGGCGAAGGATATTGAGATGATCAAAAGGAGGCTACGAGTACTGGAGGACAGGTTTAGTTCCAAGCCAGTTGTTATAGTAACAGAAAAGGATTATGATCGAGACCCCAATATTTTCAAGTACTTGGGTCCTTTTGAAGTTCTGGCACTCTGTTCTGAATTGAAGATCATACCTAACAGAGGATACACTGAATATAGCTTCAAAAAGTTGTTGACGGAGGTTTGCACATGA

Protein Analysis

122

Amino Acids

14.46

Weight (kDa)

7.63

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030126)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0424981
rosa_laevigata RLG00000009168

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 116, 134
AfaI GTAC 3 cut(s) 5, 180, 260
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 5 cut(s) 116, 256, 275, 301, 340
AluBI AGCT 2 cut(s) 28, 336
AluI AGCT 2 cut(s) 28, 336
Alw26I GTCTC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 116, 134
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 314
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 314
BmcAI AGTACT 2 cut(s) 180, 260
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 186, 206
Bse8I GATNNNNATC 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 186, 206
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 234
Bso31I GGTCTC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 159, 235, 303
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 2 cut(s) 186, 206
BssMI GATC 3 cut(s) 159, 235, 303
BstDEI CTNAG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 315
BstKTI GATC 3 cut(s) 162, 238, 306
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 159, 235, 303
BstSFI CTRYAG 1 cut(s) 83
BsuI GTATCC 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 127, 324
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 4, 179, 259
CviAII CATG 3 cut(s) 22, 60, 366
CviJI RGCY 5 cut(s) 28, 112, 172, 205, 336
CviKI_1 RGCY 5 cut(s) 28, 112, 172, 205, 336
CviQI GTAC 3 cut(s) 4, 179, 259
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 161, 237, 305
DpnII GATC 3 cut(s) 159, 235, 303
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 116
FaeI CATG 3 cut(s) 25, 63, 369
FatI CATG 3 cut(s) 21, 59, 365
FbaI TGATCA 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 203
Hin1II CATG 3 cut(s) 25, 63, 369
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 85, 363
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 3 cut(s) 25, 63, 369
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 159, 235, 303
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 125, 167, 175, 219, 266
MaeIII GTNAC 2 cut(s) 122, 217
MalI GATC 3 cut(s) 161, 237, 305
MboI GATC 3 cut(s) 159, 235, 303
MboII GAAGA 1 cut(s) 313
MluCI AATT 3 cut(s) 116, 134, 296
MnlI CCTC 4 cut(s) 162, 178, 311, 349
NdeII GATC 3 cut(s) 159, 235, 303
NlaIII CATG 3 cut(s) 25, 63, 369
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 266
PspPPI RGGWCCY 1 cut(s) 266
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 3 cut(s) 5, 180, 260
RsaNI GTAC 3 cut(s) 4, 179, 259
Sau3AI GATC 3 cut(s) 159, 235, 303
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 2 cut(s) 180, 260
SetI ASST 5 cut(s) 30, 194, 313, 338, 360
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 266
Sse9I AATT 3 cut(s) 116, 134, 296
SspI AATATT 1 cut(s) 250
TaqI TCGA 1 cut(s) 238
TasI AATT 3 cut(s) 116, 134, 296
TatI WGTACW 3 cut(s) 3, 178, 258
TscAI CASTG 2 cut(s) 127, 331
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 2 cut(s) 127, 331
VpaK11BI GGWCC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 2 cut(s) 116, 134
ZrmI AGTACT 2 cut(s) 180, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.