Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0030126

Physical Location & Seq

Genomic Coordinates Reverse (-)

48004934 .. 48008387

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACCTCCGCTACCAGATGGTGCAGAGTGCGGGCTATGGTGGCCATTGTAGATGATGAGGAGGAGGATGAAGAGAGTGCGATGAAGGAGAAGAGGAAGAAGAGGACGGCTGATGCGAACATTAAGCTTGGGGATATTATTCCAGCAGATGCTCGTCTCCTCAACCGTGATCCACTGAAATTGATCGGTCTGCACTTACCCATGAGTCACTTCCTGTGGCCAAAGGCCCTGATTGGAGCATTTTATGTTGATCGGCTTGAATTCAGTGACCACCACAAATTTCTGGCAAAGGATATTGAGATGATCAAAAGGAGCCTACGAGAACTGGAGGACAGGTTTAGTTCCAAGCCAGTTGTTATAGTAACAACAAAGGATTATGATCAAGACCCTAATATTTTCAAGTACTTGGATCCTTTTGAAGTTCTGGCACTCTATTCTGAATTGAAGATCATACCTAACAGAGGATGCACTGAAGATAGCTTCAAAAAGTTGTTGAAGGAGGTTTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009029 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxK

Protein Analysis

171

Amino Acids

19.77

Weight (kDa)

6.44

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0030126)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0424981
rosa_laevigata	RLG00000009168

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 31
AclWI	GGATC	3 cut(s)	164, 404, 417
AcoI	YGGCCR	2 cut(s)	42, 218
AcsI	RAATTY	2 cut(s)	260, 278
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	6 cut(s)	260, 400, 419, 445, 484, 496
AluBI	AGCT	2 cut(s)	127, 480
AluI	AGCT	2 cut(s)	127, 480
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	164, 404, 417
AoxI	GGCC	3 cut(s)	42, 218, 225
ApoI	RAATTY	2 cut(s)	260, 278
AspS9I	GGNCC	1 cut(s)	226
BalI	TGGCCA	2 cut(s)	44, 220
BamHI	GGATCC	1 cut(s)	409
BccI	CCATC	1 cut(s)	12
BceAI	ACGGC	1 cut(s)	123
BclI	TGATCA	2 cut(s)	303, 379
BcoDI	GTCTC	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	314, 411
BmsI	GCATC	3 cut(s)	103, 139, 455
BpmI	CTGGAG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	330, 350
Bse8I	GATNNNNATC	1 cut(s)	378
BseGI	GGATG	2 cut(s)	73, 470
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	330, 350
BseRI	GAGGAG	3 cut(s)	74, 77, 149
BsgI	GTGCAG	2 cut(s)	43, 176
BshFI	GGCC	3 cut(s)	44, 220, 227
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	44, 220, 227
Bsp143I	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
BspACI	CCGC	2 cut(s)	9, 31
BspANI	GGCC	3 cut(s)	44, 220, 227
BspLI	GGNNCC	2 cut(s)	314, 411
BspPI	GGATC	3 cut(s)	164, 404, 417
BsrI	ACTGG	2 cut(s)	330, 350
BssMI	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	3 cut(s)	66, 86, 95
BstC8I	GCNNGC	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	73, 470
BstKTI	GATC	7 cut(s)	172, 186, 253, 306, 382, 412, 450
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	44, 220, 227
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	73, 470
BtsIMutI	CAGTG	3 cut(s)	173, 271, 468
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	2 cut(s)	202, 510
CviQI	GTAC	1 cut(s)	403
DpnI	GATC	7 cut(s)	171, 185, 252, 305, 381, 411, 449
DpnII	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
EaeI	YGGCCR	2 cut(s)	42, 218
Eam1104I	CTCTTC	3 cut(s)	66, 86, 95
EarI	CTCTTC	3 cut(s)	66, 86, 95
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	2 cut(s)	205, 513
FaiI	YATR	7 cut(s)	38, 203, 246, 359, 378, 452, 511
FatI	CATG	2 cut(s)	201, 509
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	303, 379
FokI	GGATG	2 cut(s)	80, 477
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	44, 220, 227
Hin1II	CATG	2 cut(s)	205, 513
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	79, 490
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	24, 193, 468, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	205, 513
Ksp22I	TGATCA	2 cut(s)	303, 379
Kzo9I	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
LmnI	GCTCC	2 cut(s)	236, 312
LpnPI	CCDG	9 cut(s)	28, 156, 227, 242, 269, 311, 319, 363, 410
LweI	GCATC	3 cut(s)	103, 139, 455
MaeIII	GTNAC	3 cut(s)	206, 266, 361
MalI	GATC	7 cut(s)	171, 185, 252, 305, 381, 411, 449
MboI	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
MboII	GAAGA	6 cut(s)	83, 103, 109, 112, 457, 485
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	2 cut(s)	44, 220
MluCI	AATT	4 cut(s)	179, 260, 278, 440
MluNI	TGGCCA	2 cut(s)	44, 220
MlyI	GAGTC	1 cut(s)	214
Mox20I	TGGCCA	2 cut(s)	44, 220
MscI	TGGCCA	2 cut(s)	44, 220
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	2 cut(s)	44, 220
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
NlaIII	CATG	2 cut(s)	205, 513
NlaIV	GGNNCC	2 cut(s)	314, 411
NmuCI	GTSAC	2 cut(s)	206, 266
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	314, 411
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	7 cut(s)	169, 183, 250, 303, 379, 409, 447
Sau96I	GGNCC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	214
SetI	ASST	6 cut(s)	8, 129, 338, 457, 482, 504
SfaNI	GCATC	3 cut(s)	103, 139, 455
Sse9I	AATT	4 cut(s)	179, 260, 278, 440
SsiI	CCGC	2 cut(s)	9, 31
SspI	AATATT	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	4 cut(s)	179, 260, 278, 440
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	3 cut(s)	180, 271, 475
TseFI	GTSAC	2 cut(s)	206, 266
Tsp45I	GTSAC	2 cut(s)	206, 266
TspDTI	ATGAA	2 cut(s)	84, 98
TspRI	CASTG	3 cut(s)	180, 271, 475
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	2 cut(s)	260, 278
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.