RchiOBHm_Chr4g0431391

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030038
Physical Location & Seq
Forward (+)
55656660 .. 55657193
534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40005

Sequence Viewer

Length: 534 bp
ATGACAGTTAAATTGGAGTCATCGTTCCACTGTAAATTGTCTGTGAATAACAGGTCCAGCACCTCGTCTTTCGGATGCTTGAGAATTTCAGAGAGCTTGACTTTGATTCTCGCTTCTACAAATATGACTCCTTCATCATTACAATCAATGGAGACTCTAGCTAGGCCAAATTCAAAATGGCCAACTGAAGGACAAATTGAATTTCAAAATGTACAAGTTCAATATAAGCCTGAGGATCCAATGGTATTGAAAAGGATCACTTGCACATTCTCTACAAGGATGAAAATTGGAGTGGTGGGAAGAACAGGAAGTGGAAAGTCCACTATGATCCAAGCCTCGTTTAGAGTTGTTGAGCTCTCAGGAGGGAAAATTCTCATTGATGAACAAGACATTTCTAAAATAGGCCTGCTGGATTTGGGGTCAAGTTTAGGCATAATCCCACAAGACCGGACTCTATTTCAAGGAACTTTGAGGAATAATCCGGATCCTCTGCAGCAACATTCTGATCTAGAAATATTGGAGGTTGCCATCTAA

Protein Analysis

177

Amino Acids

19.49

Weight (kDa)

7.72

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 83 - 165 3.1e-10 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431391
rosa_samantha Rh4BG314200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 481
AclWI GGATC 6 cut(s) 230, 243, 263, 322, 479, 492
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 4 cut(s) 84, 169, 200, 369
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 6 cut(s) 174, 200, 206, 221, 250, 461
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 3 cut(s) 96, 161, 355
AluI AGCT 3 cut(s) 96, 161, 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 6 cut(s) 230, 243, 263, 322, 479, 492
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 3 cut(s) 164, 179, 403
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 4 cut(s) 84, 169, 200, 369
AspS9I GGNCC 1 cut(s) 54
AvaII GGWCC 1 cut(s) 54
AxyI CCTNAGG 1 cut(s) 231
BalI TGGCCA 1 cut(s) 181
BamHI GGATCC 2 cut(s) 235, 484
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 3 cut(s) 158, 162, 509
BfmI CTRYAG 1 cut(s) 491
BisI GCNGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 237, 486
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 100
BsaWI WCCGGW 2 cut(s) 447, 481
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 481
BseGI GGATG 2 cut(s) 80, 285
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 222, 372
BseXI GCAGC 1 cut(s) 505
BshFI GGCC 3 cut(s) 166, 181, 405
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 448, 482
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 3 cut(s) 166, 181, 405
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 5 cut(s) 235, 255, 327, 484, 505
BspANI GGCC 3 cut(s) 166, 181, 405
BspCNI CTCAG 2 cut(s) 223, 371
BspEI TCCGGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 237, 486
BspMAI CTGCAG 1 cut(s) 495
BspPI GGATC 6 cut(s) 230, 243, 263, 322, 479, 492
BsrGI TGTACA 1 cut(s) 211
BssMI GATC 5 cut(s) 235, 255, 327, 484, 505
Bst4CI ACNGT 2 cut(s) 7, 32
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 231, 358
BstF5I GGATG 2 cut(s) 80, 285
BstKTI GATC 5 cut(s) 238, 258, 330, 487, 508
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 5 cut(s) 235, 255, 327, 484, 505
BstSFI CTRYAG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 505
BstX2I RGATCY 2 cut(s) 235, 484
BstYI RGATCY 2 cut(s) 235, 484
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 166, 181, 405
BtsCI GGATG 2 cut(s) 80, 285
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 212
CviJI RGCY 8 cut(s) 96, 161, 166, 181, 229, 335, 355, 405
CviKI_1 RGCY 8 cut(s) 96, 161, 166, 181, 229, 335, 355, 405
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 231, 358
DpnI GATC 5 cut(s) 237, 257, 329, 486, 507
DpnII GATC 5 cut(s) 235, 255, 327, 484, 505
EaeI YGGCCR 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 357
FaiI YATR 4 cut(s) 125, 225, 326, 434
FalI AAGNNNNNCTT 2 cut(s) 244, 276
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 2 cut(s) 87, 292
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 3 cut(s) 158, 162, 509
GluI GCNGC 1 cut(s) 494
HaeIII GGCC 3 cut(s) 166, 181, 405
HapII CCGG 2 cut(s) 448, 482
HinfI GANTC 5 cut(s) 17, 106, 127, 154, 451
HpaII CCGG 2 cut(s) 448, 482
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 74, 91, 505
Hpy188III TCNNGA 3 cut(s) 360, 482, 509
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 141, 182
HpyCH4III ACNGT 2 cut(s) 7, 32
HpyCH4V TGCA 2 cut(s) 264, 493
HpyF3I CTNAG 2 cut(s) 231, 358
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 235, 255, 327, 484, 505
LpnPI CCDG 9 cut(s) 37, 70, 243, 291, 345, 395, 419, 461, 495
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 1 cut(s) 65
MaeI CTAG 3 cut(s) 158, 162, 509
MalI GATC 5 cut(s) 237, 257, 329, 486, 507
MboI GATC 5 cut(s) 235, 255, 327, 484, 505
MboII GAAGA 1 cut(s) 312
MflI RGATCY 2 cut(s) 235, 484
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 8 cut(s) 11, 35, 84, 169, 195, 200, 285, 369
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 4 cut(s) 26, 121, 148, 445
MnlI CCTC 7 cut(s) 73, 226, 346, 356, 465, 498, 514
Mox20I TGGCCA 1 cut(s) 181
MroI TCCGGA 1 cut(s) 481
MscI TGGCCA 1 cut(s) 181
MseI TTAA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 181
MspI CCGG 2 cut(s) 448, 482
NdeII GATC 5 cut(s) 235, 255, 327, 484, 505
NlaIV GGNNCC 2 cut(s) 237, 486
PceI AGGCCT 1 cut(s) 405
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 4 cut(s) 25, 121, 148, 445
PpsI GAGTC 4 cut(s) 25, 121, 148, 445
Psp124BI GAGCTC 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 237, 486
PspPI GGNCC 1 cut(s) 54
PstI CTGCAG 1 cut(s) 495
PsuI RGATCY 2 cut(s) 235, 484
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 5 cut(s) 235, 255, 327, 484, 505
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 4 cut(s) 26, 121, 148, 445
SduI GDGCHC 1 cut(s) 357
SetI ASST 6 cut(s) 56, 65, 98, 163, 357, 525
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 8 cut(s) 11, 35, 84, 169, 195, 200, 285, 369
SseBI AGGCCT 1 cut(s) 405
SspI AATATT 1 cut(s) 516
SspMI CTAG 3 cut(s) 158, 162, 509
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 405
TaaI ACNGT 2 cut(s) 7, 32
TasI AATT 8 cut(s) 11, 35, 84, 169, 195, 200, 285, 369
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 35
TseI GCWGC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 123, 296, 396
TspRI CASTG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 4 cut(s) 84, 169, 200, 369
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XspI CTAG 3 cut(s) 158, 162, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.