Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0030038

Physical Location & Seq

Genomic Coordinates Forward (+)

48159233 .. 48159676

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATATCTGTTGAGAGAATTCTTCAATTCACAGGAGTACAAAGTGAGGCACCACTTGTGATCGAAGCTTCTAGGCCAAACTCAGAATGGCGAACTGAAGGACAAATTGAATTTCAAAATGTGCAAGTTCAATATAAGCCTGAAGATCTAATGGTATTGAAAAGGATCACTTGCACATTCTCTAAAAGGATGAAAATTGGAGTGGTGGGAAGAACAGGAAGTGGAAAGTCCACTATGATCCAAGCCTTGTTTAGAGTTGTTGAGCTCTCAGGAGGGAAAATTCACATTGATGAACAAGACATTTCTAAAATAGGCCTGCTGGATTTGGGGCCAAGTTTAGGCATAATCCCACAAGACCCGACTATATTTCAAGGAACTTTGAGGAATAATCTGGATCCTCTGCAGCAACATTCTGATCTAGAAATATTGGAGGTTGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

5.4

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	53 - 135	1.1e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030038)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431391
rosa_samantha	Rh4BG314200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AclWI	GGATC	4 cut(s)	173, 232, 389, 402
AcsI	RAATTY	3 cut(s)	18, 110, 279
AcuI	CTGAAG	2 cut(s)	117, 162
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	6 cut(s)	26, 110, 116, 131, 160, 371
AluBI	AGCT	2 cut(s)	68, 265
AluI	AGCT	2 cut(s)	68, 265
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	4 cut(s)	173, 232, 389, 402
AoxI	GGCC	3 cut(s)	74, 313, 329
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	18, 110, 279
AspS9I	GGNCC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	415
BfaI	CTAG	2 cut(s)	72, 419
BfmI	CTRYAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	3 cut(s)	51, 330, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	96, 282
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	76, 315, 331
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	338
BsnI	GGCC	3 cut(s)	76, 315, 331
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
BspANI	GGCC	3 cut(s)	76, 315, 331
BspCNI	CTCAG	2 cut(s)	95, 281
BspLI	GGNNCC	3 cut(s)	51, 330, 396
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	4 cut(s)	173, 232, 389, 402
BspT107I	GGYRCC	1 cut(s)	49
BssMI	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	82, 268
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	6 cut(s)	63, 148, 168, 240, 397, 418
BstMBI	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	145, 394
BstYI	RGATCY	2 cut(s)	145, 394
BsuRI	GGCC	3 cut(s)	76, 315, 331
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	7 cut(s)	68, 76, 139, 245, 265, 315, 331
CviKI_1	RGCY	7 cut(s)	68, 76, 139, 245, 265, 315, 331
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	82, 268
DpnI	GATC	6 cut(s)	62, 147, 167, 239, 396, 417
DpnII	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
Ecl136II	GAGCTC	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	117, 162
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	267
FaiI	YATR	4 cut(s)	135, 236, 344, 365
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	72, 419
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	76, 315, 331
HindIII	AAGCTT	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	85, 415
Hpy188III	TCNNGA	3 cut(s)	270, 392, 419
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	124, 174, 403
HpyF3I	CTNAG	2 cut(s)	82, 268
Kzo9I	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
LpnPI	CCDG	7 cut(s)	18, 153, 201, 255, 305, 329, 377
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	72, 419
MalI	GATC	6 cut(s)	62, 147, 167, 239, 396, 417
MboI	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
MboII	GAAGA	3 cut(s)	14, 155, 222
MflI	RGATCY	2 cut(s)	145, 394
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	6 cut(s)	18, 26, 105, 110, 195, 279
MnlI	CCTC	5 cut(s)	40, 266, 375, 408, 424
MslI	CAYNNNNRTG	1 cut(s)	288
NdeII	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
NlaIV	GGNNCC	3 cut(s)	51, 330, 396
PceI	AGGCCT	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	51, 330, 396
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	2 cut(s)	145, 394
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	6 cut(s)	60, 145, 165, 237, 394, 415
Sau96I	GGNCC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	3 cut(s)	70, 267, 435
SfcI	CTRYAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	6 cut(s)	18, 26, 105, 110, 195, 279
SseBI	AGGCCT	1 cut(s)	315
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	72, 419
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	63
TasI	AATT	6 cut(s)	18, 26, 105, 110, 195, 279
TatI	WGTACW	1 cut(s)	37
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	206, 306
XapI	RAATTY	3 cut(s)	18, 110, 279
XbaI	TCTAGA	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XspI	CTAG	2 cut(s)	72, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.