Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021861

Physical Location & Seq

Genomic Coordinates Forward (+)

58264437 .. 58266258

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAAAGAAGAAATCCTTTGTATCTGCTAGTCATGTTCGTTGGCTTTTTACTCTTTAAAGCACTATGGATGCAGCTAGACACCTCGGCCGAATTCCGCAATGGCGCTCTTCCGGGACCTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATAAAGAGATTAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

60

Amino Acids

6.95

Weight (kDa)

8.2

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72960 AT1G72960
rosa_chinensis	RchiOBHm_Chr4g0434511
rosa_samantha	Rh4BG000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	92
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	2 cut(s)	29, 77
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	117, 145
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	117, 145
BspQI	GCTCTTC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	75
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	3 cut(s)	34, 155, 161
CviJI	RGCY	3 cut(s)	45, 76, 89
CviKI_1	RGCY	3 cut(s)	45, 76, 89
DraI	TTTAAA	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	116
Eco52I	CGGCCG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	37, 158, 164
FaiI	YATR	6 cut(s)	35, 67, 156, 162, 179, 181
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	33, 154, 160
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	29, 77
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	37, 158, 164
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	73
Hsp92II	CATG	3 cut(s)	37, 158, 164
HspAI	GCGC	1 cut(s)	105
LguI	GCTCTTC	1 cut(s)	114
LpnPI	CCDG	1 cut(s)	126
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	2 cut(s)	29, 77
MboII	GAAGA	2 cut(s)	21, 101
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	179
NlaIII	CATG	3 cut(s)	37, 158, 164
NlaIV	GGNNCC	2 cut(s)	117, 145
NmeAIII	GCCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	117, 145
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	74
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	3 cut(s)	78, 86, 121
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	9 cut(s)	41, 46, 89, 97, 125, 126, 149, 167, 173
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	29, 77
StyD4I	CCNGG	1 cut(s)	112
TasI	AATT	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	17, 171
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	2 cut(s)	29, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.