Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029849

Physical Location & Seq

Genomic Coordinates Reverse (-)

60541272 .. 60541733

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTGCTTGGACTGTCTGTCTTCTGGCACATTATACAGATTGGCAAGAGAGAGGAAGAAAGGAGGTCCTGCAAATATTTGGCAAACAAAACCCTGATCCAGATGGCCTTACCAAGCTTAAAACAATGAGTATGATCATCAATGAATCACTAAGGTTATACCCTCCAGTTCTGTCCATTGAGTGGAAAGTTTATTGGGAAGTTAAACTAGGAAAGCTCATTGTTCCTGCTAATGTTGAAGTGCACATTCCAACTCTAGCACTGCACCATGAGCCTCTATTCTGGGGTCAAGATGTACAACTTTTCAAGCCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

105

Amino Acids

12.28

Weight (kDa)

6.41

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 105	4.6e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110961 RchiOBHm_Chr4g0437471

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	183
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	239, 307
AhdI	GACNNNNNGTC	1 cut(s)	18
AluBI	AGCT	2 cut(s)	118, 217
AluI	AGCT	2 cut(s)	118, 217
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	106
ApaLI	GTGCAC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	135
BfaI	CTAG	2 cut(s)	209, 257
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	97, 135
BspANI	GGCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	97, 135
Bst4CI	ACNGT	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	100, 138
BstMBI	GATC	2 cut(s)	97, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	5 cut(s)	108, 118, 217, 274, 310
CviKI_1	RGCY	5 cut(s)	108, 118, 217, 274, 310
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	99, 137
DpnII	GATC	2 cut(s)	97, 135
DriI	GACNNNNNGTC	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	67
FaeI	CATG	1 cut(s)	272
FaiI	YATR	4 cut(s)	36, 134, 160, 270
FatI	CATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	135
FspBI	CTAG	2 cut(s)	209, 257
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	101, 290
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	73, 244, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	97, 135
LpnPI	CCDG	7 cut(s)	11, 83, 108, 114, 180, 240, 268
MaeI	CTAG	2 cut(s)	209, 257
MalI	GATC	2 cut(s)	99, 137
MboI	GATC	2 cut(s)	97, 135
MboII	GAAGA	2 cut(s)	14, 69
MhlI	GDGCHC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	47, 58, 174, 285
MseI	TTAA	2 cut(s)	120, 204
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	97, 135
NlaIII	CATG	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	120, 204
Sau3AI	GATC	2 cut(s)	97, 135
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	4 cut(s)	69, 120, 158, 219
SinI	GGWCC	1 cut(s)	67
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	2 cut(s)	209, 257
TaaI	ACNGT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	120, 204
Tru9I	TTAA	2 cut(s)	120, 204
TscAI	CASTG	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	183
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	2 cut(s)	209, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.