Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030110

Physical Location & Seq

Genomic Coordinates Reverse (-)

62756245 .. 62756701

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGATGAGCTCTTTGAGATGCATAGCAAAACACCCAACAATTGCACTAGTAGACTCATCCACTACTCTCAAAGATCTCAAGCAAATCCACACCCAACTCCTTAATAACGGCGTCCTCAACGATCCTCACCACTCCGGCAATTTTGTTGCCACCGTTGCCGTCCGGAACCCCAACAATTTGGAATATTCCAACCGAATTCTGGACCAATGTGACAACCCAACTCTCTTCGCCTTCAACTCCATGATCAGGGCCTGTTCCAAATGCTCCGCACCCACTAAAAGCTTTCACTTTTACAGCAGAATCCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

9.07

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030110)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0440731
rosa_samantha	Rh4DG386000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	199, 246
AgsI	TTSAA	1 cut(s)	235
AhlI	ACTAGT	1 cut(s)	46
AluBI	AGCT	2 cut(s)	9, 282
AluI	AGCT	2 cut(s)	9, 282
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	202, 249
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BceAI	ACGGC	2 cut(s)	124, 143
BclI	TGATCA	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	202, 249
BmiI	GGNNCC	1 cut(s)	167
BmsI	GCATC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 246
BseAI	TCCGGA	1 cut(s)	162
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	199, 246
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	135, 163
BslI	CCNNNNNNNGG	2 cut(s)	199, 246
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	73, 121, 243
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	251
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	116
BssMI	GATC	3 cut(s)	73, 121, 243
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	3 cut(s)	76, 124, 246
BstMBI	GATC	3 cut(s)	73, 121, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	202, 249
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	3 cut(s)	9, 251, 282
CviKI_1	RGCY	3 cut(s)	9, 251, 282
DpnI	GATC	3 cut(s)	75, 123, 245
DpnII	GATC	3 cut(s)	73, 121, 243
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	23, 242
FatI	CATG	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	135, 163
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	2 cut(s)	53, 300
HpaII	CCGG	2 cut(s)	135, 163
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	163, 200
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	21, 44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	73, 121, 243
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	148, 176, 185, 232, 265
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	75, 123, 245
MboI	GATC	3 cut(s)	73, 121, 243
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	39, 139, 175, 195
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	125, 135
Mph1103I	ATGCAT	1 cut(s)	23
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	2 cut(s)	102, 310
MspI	CCGG	2 cut(s)	135, 163
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	3 cut(s)	73, 121, 243
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	202, 249
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	102, 310
Sau3AI	GATC	3 cut(s)	73, 121, 243
Sau96I	GGNCC	2 cut(s)	202, 249
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	2 cut(s)	11, 284
SfaNI	GCATC	1 cut(s)	8
SgeI	CNNG	8 cut(s)	59, 91, 147, 175, 212, 253, 259, 264
SinI	GGWCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	4 cut(s)	39, 139, 175, 195
SsiI	CCGC	1 cut(s)	267
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	4 cut(s)	39, 139, 175, 195
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	102, 310
Tru9I	TTAA	2 cut(s)	102, 310
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.