Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024967

Physical Location & Seq

Genomic Coordinates Forward (+)

63777545 .. 63778588

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGCTTTTATCCTTCCGACGTCAGTTCATGATCCTCACGGCTTGTCTCTCACTTTGTTTGGTTGCCAAAGCTGAGTTTCAACGTTTGCAACAGCAAACAAACGACGAAGGGTCTCTGAAATTCTTCGTTGTTGGAGATTGGAGCAGACGAGGACTCTACAACCAATCTCAAGTTGCAGCCCAGACCTTGTTTTCTCCACCGGCCGGTGACAATTTCTACGACGATGGTTTGAAAGGCGTTTATGATCCAGCTTTTAAAGAATCATTCTCCAACATCTGCAATGCCCAAAGCTTAAAGAAACCATATTGGTTCAGTGTATTGGGTAACCATGACTATCGTGGTAACGTTCTAGCACAACTGAATCCACTCCTCAAACGCATTGACAGTAGATGGTTTTGCTATAGATCATTCCATATCGGTTATGCAGGTGAAATCCACTATCCGATCAGTAATCACGTAAATTTACACATTAATCATATTGGGATGGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

165

Amino Acids

19.06

Weight (kDa)

8.93

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442061
rosa_rugosa	Rorug04G0338400 Rorug04G0338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
AatII	GACGTC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	419
AclI	AACGTT	2 cut(s)	85, 348
AclWI	GGATC	2 cut(s)	28, 242
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	122, 463
AcyI	GRCGYC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	83, 235
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	4 cut(s)	7, 74, 254, 294
AluI	AGCT	4 cut(s)	7, 74, 254, 294
Alw26I	GTCTC	2 cut(s)	53, 120
AlwI	GGATC	2 cut(s)	28, 242
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	4, 179
ApoI	RAATTY	2 cut(s)	122, 463
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	221, 443
BbvI	GCAGC	2 cut(s)	16, 191
BccI	CCATC	3 cut(s)	221, 387, 481
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	53, 120
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	5, 180
BlsI	GCNGC	2 cut(s)	6, 181
BmeRI	GACNNNNNGTC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	2 cut(s)	202, 206
Bse3DI	GCAATG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	16, 191
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	203, 207
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	53, 120
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	33, 247, 407, 447
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	28, 242
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	2 cut(s)	202, 206
BssAI	RCCGGY	2 cut(s)	202, 206
BssMI	GATC	4 cut(s)	33, 247, 407, 447
BssNI	GRCGYC	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	492
BstKTI	GATC	4 cut(s)	36, 250, 410, 450
BstMAI	GTCTC	2 cut(s)	53, 120
BstMBI	GATC	4 cut(s)	33, 247, 407, 447
BstMCI	CGRYCG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	16, 191
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	2 cut(s)	202, 206
CviAII	CATG	2 cut(s)	31, 332
CviJI	RGCY	7 cut(s)	7, 44, 74, 182, 206, 254, 294
CviKI_1	RGCY	7 cut(s)	7, 44, 74, 182, 206, 254, 294
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	4 cut(s)	35, 249, 409, 449
DpnII	GATC	4 cut(s)	33, 247, 407, 447
DraI	TTTAAA	1 cut(s)	259
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	204
EagI	CGGCCG	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
FaeI	CATG	2 cut(s)	34, 335
FaiI	YATR	8 cut(s)	32, 246, 307, 333, 405, 417, 426, 480
FatI	CATG	2 cut(s)	30, 331
Fnu4HI	GCNGC	2 cut(s)	5, 180
Fsp4HI	GCNGC	2 cut(s)	5, 180
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	2 cut(s)	5, 180
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	203, 207
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	34, 335
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	3 cut(s)	156, 263, 364
HpaII	CCGG	2 cut(s)	203, 207
HphI	GGTGA	2 cut(s)	221, 443
Hpy188I	TCNGA	3 cut(s)	20, 120, 447
Hpy188III	TCNNGA	1 cut(s)	31
Hpy99I	CGWCG	3 cut(s)	24, 110, 227
HpyAV	CCTTC	2 cut(s)	25, 104
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	4 cut(s)	22, 85, 348, 459
HpyCH4V	TGCA	5 cut(s)	4, 91, 179, 282, 428
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	4 cut(s)	22, 85, 348, 459
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	34, 335
Kzo9I	GATC	4 cut(s)	33, 247, 407, 447
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	197, 216, 220, 264, 414
Lsp1109I	GCAGC	2 cut(s)	16, 191
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	4 cut(s)	22, 85, 348, 459
MaeIII	GTNAC	3 cut(s)	209, 326, 344
MalI	GATC	4 cut(s)	35, 249, 409, 449
MboI	GATC	4 cut(s)	33, 247, 407, 447
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	3 cut(s)	122, 214, 463
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	3 cut(s)	43, 115, 297
MnlI	CCTC	4 cut(s)	47, 146, 383, 486
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	258, 296, 474
MspI	CCGG	2 cut(s)	203, 207
NdeII	GATC	4 cut(s)	33, 247, 407, 447
NlaIII	CATG	2 cut(s)	34, 335
NmuCI	GTSAC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	263, 364
PkrI	GCNGC	2 cut(s)	6, 181
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	474
Psp1406I	AACGTT	2 cut(s)	85, 348
PspEI	GGTNACC	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	258, 296, 474
SatI	GCNGC	2 cut(s)	5, 180
Sau3AI	GATC	4 cut(s)	33, 247, 407, 447
SchI	GAGTC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	122, 214, 463
SspMI	CTAG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	4 cut(s)	25, 88, 351, 462
TasI	AATT	3 cut(s)	122, 214, 463
TfiI	GAWTC	2 cut(s)	263, 364
Tru1I	TTAA	3 cut(s)	258, 296, 474
Tru9I	TTAA	3 cut(s)	258, 296, 474
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	4, 179
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	322
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	2 cut(s)	122, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	353
ZraI	GACGTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.