Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0024967

Physical Location & Seq

Genomic Coordinates Forward (+)

51213831 .. 51215881

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAATTGCAAGAAGCTTTCATCGTCACAGCAAGTTGTCTAGGCTTCATCTCTGTTTGTAAAGCTTTGGTCAATTTTTTGAGATGGGTGTGGGTCATGTTTCTGAGATCCCCCAAGAATCTCAAGGAGTATGGATCTTGGGCAATCATCACTGGCTCCACTGATGGAATTGGCAAAGCCCTTGCCTTTGAACTGGCTTCGAAGGGTCTCAACCTCGTCTTGGTTGGTCGAAACCCTTTGAAGCTCGAAGCTACCTCCAATGGAATCCGCGAGAAATACAGTCATAAACAAGTGGAAATTAAGAGCATTGTCGTCGACTTGGCCAAAGCTAGTGGGGAGGAAATAGCTAGGACCATAGAGGAAGGAATCAAAGGTCTTGATGTTGGCATTTTGATTAATAATGCAGGGATGTCTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTCGGAGCTGATGGAGAACATGTTAAAGGTGAACATGGAAGCCCCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATCGGCTCTGCTTCCTCCAAGCACCCTTCTCTGCCCCTCTACACACTATATGCTGCTACCAAATCGTACATTAAAATGTTCGCAAGATGCATTAATTTGGAATACAAGCAGCATGGAATTGATATTCAGTGTCAGGTGCCTCATTTCGTGGCGACGAAGATGACAGAGGATTTGAAGAAGTCGGTTCCCTTGGTAGTGGCAACACTGGAGAGATTCACGAAAGCAAGCATTCGATGGATTGGTTATGAGCATCTATGTAATCCCTACTGGTTGCATTCAGTGGAGTGGTCCATAGTACATGCAGCTCCTGATGCATTAGTTAATGCCATCACGTTTTGGATCTGCAGAGGTATCAGAAAGAGAGGCCAAATGAAGGAGTACGTCACAGTAAAAAGATGCAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

320

Amino Acids

35.95

Weight (kDa)

9.3

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	47 - 245	1.4e-41	short chain dehydrogenase
adh_short_C2	PF13561	54 - 246	2.7e-22	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442061
rosa_rugosa	Rorug04G0338400 Rorug04G0338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	3 cut(s)	102, 142, 902
AcoI	YGGCCR	1 cut(s)	321
AfaI	GTAC	3 cut(s)	623, 852, 935
AfiI	CCNNNNNNNGG	4 cut(s)	220, 495, 496, 928
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	191, 241, 730
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	8 cut(s)	17, 65, 244, 251, 329, 347, 454, 860
AluI	AGCT	8 cut(s)	17, 65, 244, 251, 329, 347, 454, 860
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	102, 142, 902
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	2 cut(s)	321, 919
ApeKI	GCWGC	3 cut(s)	608, 664, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AseI	ATTAAT	2 cut(s)	396, 648
AspS9I	GGNCC	2 cut(s)	351, 843
AsuHPI	GGTGA	2 cut(s)	487, 511
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	351, 843
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	691
BbvI	GCAGC	3 cut(s)	595, 676, 869
BccI	CCATC	5 cut(s)	78, 158, 451, 783, 890
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	4 cut(s)	41, 330, 348, 504
BfmI	CTRYAG	1 cut(s)	898
BisI	GCNGC	3 cut(s)	609, 665, 858
BlsI	GCNGC	3 cut(s)	610, 666, 859
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	351, 843
BmgT120I	GGNCC	2 cut(s)	351, 843
BmiI	GGNNCC	3 cut(s)	157, 693, 741
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	4 cut(s)	632, 814, 856, 941
BpmI	CTGGAG	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	107, 512
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	744
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 534, 564
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 495, 496, 928
Bse1I	ACTGG	4 cut(s)	157, 198, 765, 827
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	4 cut(s)	220, 495, 496, 928
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	4 cut(s)	157, 198, 765, 827
BseXI	GCAGC	3 cut(s)	595, 676, 869
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	323, 921
BshNI	GGYRCC	1 cut(s)	691
BslI	CCNNNNNNNGG	4 cut(s)	220, 495, 496, 928
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	3 cut(s)	528, 783, 829
BsnI	GGCC	2 cut(s)	323, 921
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	107, 134, 894
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	323, 921
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	157, 693, 741
BspMAI	CTGCAG	1 cut(s)	902
BspPI	GGATC	3 cut(s)	102, 142, 902
BspT104I	TTCGAA	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	4 cut(s)	157, 198, 765, 827
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	3 cut(s)	107, 134, 894
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	281, 943
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	781
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	110, 137, 897
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	107, 134, 894
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	2 cut(s)	469, 857
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	898
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	595, 676, 869
BstX2I	RGATCY	3 cut(s)	107, 134, 894
BstYI	RGATCY	3 cut(s)	107, 134, 894
BsuRI	GGCC	2 cut(s)	323, 921
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	2 cut(s)	516, 961
BtsIMutI	CAGTG	7 cut(s)	150, 159, 516, 689, 758, 840, 961
Cac8I	GCNNGC	1 cut(s)	781
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	351, 843
Csp6I	GTAC	3 cut(s)	622, 851, 934
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	6 cut(s)	97, 437, 466, 481, 668, 854
CviQI	GTAC	3 cut(s)	622, 851, 934
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	3 cut(s)	109, 136, 896
DpnII	GATC	3 cut(s)	107, 134, 894
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	351, 843
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	744
EcoT22I	ATGCAT	2 cut(s)	647, 871
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	6 cut(s)	100, 440, 469, 484, 671, 857
FatI	CATG	6 cut(s)	96, 436, 465, 480, 667, 853
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	609, 665, 858
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	3 cut(s)	609, 665, 858
FspBI	CTAG	4 cut(s)	41, 330, 348, 504
GluI	GCNGC	3 cut(s)	609, 665, 858
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	323, 921
Hin1II	CATG	6 cut(s)	100, 440, 469, 484, 671, 857
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	15, 63
HinfI	GANTC	5 cut(s)	118, 264, 366, 446, 768
HphI	GGTGA	2 cut(s)	487, 511
Hpy166II	GTNNAC	2 cut(s)	316, 478
Hpy188I	TCNGA	3 cut(s)	105, 451, 911
Hpy188III	TCNNGA	5 cut(s)	377, 437, 529, 772, 863
Hpy8I	GTNNAC	2 cut(s)	316, 478
Hpy99I	CGWCG	2 cut(s)	317, 712
HpyAV	CCTTC	4 cut(s)	196, 356, 591, 922
HpyCH4III	ACNGT	2 cut(s)	281, 943
HpyCH4IV	ACGT	2 cut(s)	887, 936
HpyCH4V	TGCA	9 cut(s)	10, 404, 425, 645, 829, 857, 869, 900, 954
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	2 cut(s)	887, 936
Hsp92II	CATG	6 cut(s)	100, 440, 469, 484, 671, 857
Kzo9I	GATC	3 cut(s)	107, 134, 894
LmnI	GCTCC	4 cut(s)	161, 451, 542, 865
LpnPI	CCDG	9 cut(s)	138, 179, 390, 504, 531, 674, 746, 808, 876
Lsp1109I	GCAGC	3 cut(s)	595, 676, 869
LweI	GCATC	4 cut(s)	632, 814, 856, 941
MaeI	CTAG	4 cut(s)	41, 330, 348, 504
MaeII	ACGT	2 cut(s)	887, 936
MaeIII	GTNAC	3 cut(s)	25, 499, 937
MalI	GATC	3 cut(s)	109, 136, 896
MboI	GATC	3 cut(s)	107, 134, 894
MboII	GAAGA	4 cut(s)	544, 547, 724, 742
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	3 cut(s)	107, 134, 894
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	7 cut(s)	5, 73, 168, 297, 546, 649, 672
MluNI	TGGCCA	1 cut(s)	323
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	2 cut(s)	647, 871
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	7 cut(s)	300, 396, 470, 627, 648, 876, 961
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	3 cut(s)	528, 783, 829
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	866
NdeII	GATC	3 cut(s)	107, 134, 894
NlaIII	CATG	6 cut(s)	100, 440, 469, 484, 671, 857
NlaIV	GGNNCC	3 cut(s)	157, 693, 741
NmuCI	GTSAC	3 cut(s)	25, 499, 937
NsiI	ATGCAT	2 cut(s)	647, 871
NspI	RCATGY	2 cut(s)	469, 857
NspV	TTCGAA	1 cut(s)	200
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	465
PctI	GAATGC	3 cut(s)	528, 783, 829
PfeI	GAWTC	5 cut(s)	118, 264, 366, 446, 768
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	3 cut(s)	610, 666, 859
PscI	ACATGT	1 cut(s)	465
PshBI	ATTAAT	2 cut(s)	396, 648
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	157, 693, 741
PspPI	GGNCC	2 cut(s)	351, 843
PstI	CTGCAG	1 cut(s)	902
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	107, 134, 894
RsaI	GTAC	3 cut(s)	623, 852, 935
RsaNI	GTAC	3 cut(s)	622, 851, 934
RseI	CAYNNNNRTG	1 cut(s)	629
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	7 cut(s)	300, 396, 470, 627, 648, 876, 961
SatI	GCNGC	3 cut(s)	609, 665, 858
Sau3AI	GATC	3 cut(s)	107, 134, 894
Sau96I	GGNCC	2 cut(s)	351, 843
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	4 cut(s)	632, 814, 856, 941
SfcI	CTRYAG	1 cut(s)	898
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	2 cut(s)	351, 843
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	122, 527
SmoI	CTYRAG	2 cut(s)	122, 527
Sse9I	AATT	7 cut(s)	5, 73, 168, 297, 546, 649, 672
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	4 cut(s)	41, 330, 348, 504
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	281, 943
TaiI	ACGT	2 cut(s)	890, 939
TaqI	TCGA	5 cut(s)	200, 229, 246, 315, 787
TasI	AATT	7 cut(s)	5, 73, 168, 297, 546, 649, 672
TatI	WGTACW	1 cut(s)	850
TfiI	GAWTC	5 cut(s)	118, 264, 366, 446, 768
Tru1I	TTAA	7 cut(s)	300, 396, 470, 627, 648, 876, 961
Tru9I	TTAA	7 cut(s)	300, 396, 470, 627, 648, 876, 961
TscAI	CASTG	7 cut(s)	157, 166, 516, 689, 765, 840, 961
TseFI	GTSAC	3 cut(s)	25, 499, 937
TseI	GCWGC	3 cut(s)	608, 664, 857
Tsp45I	GTSAC	3 cut(s)	25, 499, 937
TspDTI	ATGAA	4 cut(s)	10, 37, 425, 941
TspRI	CASTG	7 cut(s)	157, 166, 516, 689, 765, 840, 961
VpaK11BI	GGWCC	2 cut(s)	351, 843
VspI	ATTAAT	2 cut(s)	396, 648
XceI	RCATGY	2 cut(s)	469, 857
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	4 cut(s)	41, 330, 348, 504
Zsp2I	ATGCAT	2 cut(s)	647, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.