RchiOBHm_Chr5g0007511

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021978
Physical Location & Seq
Reverse (-)
4721766 .. 4724090
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28855

Sequence Viewer

Length: 339 bp
ATGGGATTCCTTTTCTTGGTGGTGTTGGTAGTATGTGTTTGTCCTTATGAGTGTGTAGCAGATATTGATCTTGCAACAATCACTGACCGCGCAGTGTGGAGGATGCAATTGAGAAAATCTTTACAAGTAGTTTTTTGCTTTTTAGTATATTGGATTCAGTCTATTCCTTTAGAAAATATAACTGTCTATCTCAATTTATTTGATGGTCTGTGGAAATTCTGTCTTCAGATTCTGGACACAAATCCCCAATTATTTTTCCCTCTCCAACAGCAAAGGTTGATAGAACTAATTAGGAATGGAAAGGTAAAAGAGGCTCTTGAGTTTGCTAGAAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH LisH

Protein Analysis

112

Amino Acids

13.16

Weight (kDa)

7.58

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 76 - 111 7.1e-08 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61150 AT1G61150
fragaria_vesca FvH4_3g04570
rosa_chinensis RchiOBHm_Chr5g0007511

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 16
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 232
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 1 cut(s) 197
BfaI CTAG 2 cut(s) 327, 337
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 66
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 16
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 90
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 184
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 81, 99
CaiI CAGNNNCTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 92
CviJI RGCY 2 cut(s) 314, 336
CviKI_1 RGCY 2 cut(s) 314, 336
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 209
FaiI YATR 4 cut(s) 34, 48, 148, 179
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FokI GGATG 1 cut(s) 115
FspBI CTAG 2 cut(s) 327, 337
GlaI GCGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 6, 154, 229
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 233, 317
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 74, 106
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 1 cut(s) 218
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 327, 337
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 107
MluCI AATT 5 cut(s) 107, 193, 215, 248, 288
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 3 cut(s) 93, 270, 304
MunI CAATTG 1 cut(s) 107
MvnI CGCG 1 cut(s) 90
NdeII GATC 1 cut(s) 67
PfeI GAWTC 3 cut(s) 6, 154, 229
PstNI CAGNNNCTG 1 cut(s) 232
Sau3AI GATC 1 cut(s) 67
SetI ASST 3 cut(s) 278, 306, 338
SfaNI GCATC 1 cut(s) 93
SgeI CNNG 6 cut(s) 28, 83, 101, 137, 245, 329
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 5 cut(s) 107, 193, 215, 248, 288
SsiI CCGC 1 cut(s) 88
SspMI CTAG 2 cut(s) 327, 337
TaaI ACNGT 1 cut(s) 184
TasI AATT 5 cut(s) 107, 193, 215, 248, 288
TfiI GAWTC 3 cut(s) 6, 154, 229
TscAI CASTG 2 cut(s) 88, 99
TspRI CASTG 2 cut(s) 88, 99
XapI RAATTY 1 cut(s) 215
XspI CTAG 2 cut(s) 327, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.