AT1G61150

CT11-RanBPM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003571
Physical Location & Seq
Forward (+)
22542402 .. 22545661
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61150.2

Sequence Viewer

Length: 732 bp
ATGTCACTGTTTCGTATTTTTATCAATCAGCTTGAAGAAGACGACGAAGATATGGCTACTTCGAAGAAAATGATCACACGTGAAGAATGGGAGAAGAAACTAAATGCTGTGAAGCTTAGGAAAGAAGATATGAATACTTTGGTGATGAATTTTCTTGTGACTGAAGGATATGTTGAAGCTGCTGAGAAATTCCAAAGGGAGTCTGGAACCAAACCAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGATACTAGACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTTGATAGAATTAATTCGACAAGGGAAGACAGAAGAGGCCTTAGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAAGAAAACCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTGTTTTTGACGATGCCTCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGACAGCAAGTGAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGATCCTAAACTTCCAAGCTTGTTGAAGATGTTGATTTGGGCTCAAACTCAACTGGACGAGAAAGCAGTGTATCCGCACATTAATGATTTGTCTACCGGTAAGCTCGAAGACCCGTCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH LisH

Protein Analysis

243

Amino Acids

27.79

Weight (kDa)

4.66

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 25 - 51 1.3e-09 LisH
CTLH PF10607 62 - 204 4e-39 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 1 cut(s) 683
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 2 cut(s) 148, 188
AcuI CTGAAG 2 cut(s) 183, 341
AcvI CACGTG 2 cut(s) 80, 440
AdeI CACNNNGTG 1 cut(s) 440
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 704
AgsI TTSAA 6 cut(s) 35, 176, 269, 296, 313, 634
AluBI AGCT 7 cut(s) 31, 115, 179, 343, 532, 627, 712
AluI AGCT 7 cut(s) 31, 115, 179, 343, 532, 627, 712
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 1 cut(s) 605
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 179, 361, 578
ApoI RAATTY 2 cut(s) 148, 188
AseI ATTAAT 2 cut(s) 380, 690
AsiGI ACCGGT 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 62
BanII GRGCYC 2 cut(s) 345, 652
BbrPI CACGTG 2 cut(s) 80, 440
BbsI GAAGAC 3 cut(s) 45, 401, 723
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 166, 373, 590
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 521
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 524
BfuI GTATCC 1 cut(s) 690
BglII AGATCT 1 cut(s) 223
BisI GCNGC 3 cut(s) 180, 362, 579
BlsI GCNGC 3 cut(s) 181, 363, 580
Bme1390I CCNGG 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 2 cut(s) 277, 496
BpiI GAAGAC 3 cut(s) 45, 401, 723
Bpu10I CCTNAGC 2 cut(s) 116, 420
Bpu14I TTCGAA 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 521
BsaAI YACGTR 2 cut(s) 80, 440
BsaBI GATNNNNATC 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 337, 704
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 337
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 3 cut(s) 174, 309, 434
BseNI ACTGG 1 cut(s) 666
BseXI GCAGC 3 cut(s) 166, 373, 590
BshFI GGCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 3 cut(s) 338, 521, 705
BsnI GGCC 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 345, 652
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 5 cut(s) 72, 223, 241, 538, 610
BspACI CCGC 1 cut(s) 683
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 175, 310, 433
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 605
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 1 cut(s) 666
BssAI RCCGGY 1 cut(s) 704
BssMI GATC 5 cut(s) 72, 223, 241, 538, 610
Bst4CI ACNGT 3 cut(s) 9, 484, 551
Bst6I CTCTTC 1 cut(s) 396
BstAFI CTTAAG 1 cut(s) 554
BstBAI YACGTR 2 cut(s) 80, 440
BstBI TTCGAA 1 cut(s) 62
BstDEI CTNAG 5 cut(s) 116, 183, 318, 409, 420
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 5 cut(s) 75, 226, 244, 541, 613
BstMBI GATC 5 cut(s) 72, 223, 241, 538, 610
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 166, 373, 590
BstV2I GAAGAC 3 cut(s) 45, 401, 723
BstX2I RGATCY 2 cut(s) 223, 610
BstYI RGATCY 2 cut(s) 223, 610
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 5, 681
BveI ACCTGC 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 704
CspAI ACCGGT 1 cut(s) 704
DdeI CTNAG 5 cut(s) 116, 183, 318, 409, 420
DpnI GATC 5 cut(s) 74, 225, 243, 540, 612
DpnII GATC 5 cut(s) 72, 223, 241, 538, 610
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 407
Eco24I GRGCYC 2 cut(s) 345, 652
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 183, 341
Eco72I CACGTG 2 cut(s) 80, 440
EcoICRI GAGCTC 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 345, 652
FaiI YATR 3 cut(s) 53, 131, 171
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 3 cut(s) 180, 362, 579
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 2 cut(s) 345, 652
Fsp4HI GCNGC 3 cut(s) 180, 362, 579
FspBI CTAG 1 cut(s) 326
GluI GCNGC 3 cut(s) 180, 362, 579
HaeIII GGCC 1 cut(s) 407
HapII CCGG 3 cut(s) 338, 521, 705
HindIII AAGCTT 2 cut(s) 113, 625
HinfI GANTC 4 cut(s) 200, 313, 334, 583
HpaII CCGG 3 cut(s) 338, 521, 705
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 702
Hpy188I TCNGA 1 cut(s) 727
Hpy188III TCNNGA 6 cut(s) 204, 317, 338, 422, 464, 536
Hpy8I GTNNAC 1 cut(s) 702
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 9, 484, 551
HpyCH4IV ACGT 2 cut(s) 79, 439
HpyCH4V TGCA 2 cut(s) 434, 578
HpyF3I CTNAG 5 cut(s) 116, 183, 318, 409, 420
HpySE526I ACGT 2 cut(s) 79, 439
Kpn2I TCCGGA 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 5 cut(s) 72, 223, 241, 538, 610
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 166, 373, 590
LweI GCATC 2 cut(s) 277, 496
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 79, 439
MaeIII GTNAC 2 cut(s) 3, 157
MalI GATC 5 cut(s) 74, 225, 243, 540, 612
MboI GATC 5 cut(s) 72, 223, 241, 538, 610
MflI RGATCY 2 cut(s) 223, 610
MhlI GDGCHC 2 cut(s) 345, 652
MluCI AATT 5 cut(s) 148, 188, 377, 381, 470
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 277, 397, 418, 520
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 6 cut(s) 255, 303, 380, 525, 555, 690
MslI CAYNNNNRTG 1 cut(s) 690
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 3 cut(s) 338, 521, 705
MspR9I CCNGG 1 cut(s) 521
NciI CCSGG 1 cut(s) 521
NdeII GATC 5 cut(s) 72, 223, 241, 538, 610
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 3, 157
NspV TTCGAA 1 cut(s) 62
PceI AGGCCT 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 313, 334, 583
PinAI ACCGGT 1 cut(s) 704
PkrI GCNGC 3 cut(s) 181, 363, 580
PleI GAGTC 1 cut(s) 208
PmaCI CACGTG 2 cut(s) 80, 440
PmlI CACGTG 2 cut(s) 80, 440
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 2 cut(s) 80, 440
PshBI ATTAAT 2 cut(s) 380, 690
Psp124BI GAGCTC 1 cut(s) 345
PspCI CACGTG 2 cut(s) 80, 440
PspN4I GGNNCC 1 cut(s) 208
PsuI RGATCY 2 cut(s) 223, 610
RseI CAYNNNNRTG 1 cut(s) 690
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 6 cut(s) 255, 303, 380, 525, 555, 690
SatI GCNGC 3 cut(s) 180, 362, 579
Sau3AI GATC 5 cut(s) 72, 223, 241, 538, 610
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 2 cut(s) 345, 652
SfaNI GCATC 2 cut(s) 277, 496
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 5 cut(s) 148, 188, 377, 381, 470
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 1 cut(s) 683
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 9, 484, 551
TaiI ACGT 2 cut(s) 82, 442
TaqI TCGA 5 cut(s) 62, 244, 282, 385, 714
TasI AATT 5 cut(s) 148, 188, 377, 381, 470
TfiI GAWTC 3 cut(s) 313, 334, 583
Tru1I TTAA 6 cut(s) 255, 303, 380, 525, 555, 690
Tru9I TTAA 6 cut(s) 255, 303, 380, 525, 555, 690
TscAI CASTG 2 cut(s) 12, 681
TseFI GTSAC 2 cut(s) 3, 157
TseI GCWGC 3 cut(s) 179, 361, 578
Tsp45I GTSAC 2 cut(s) 3, 157
TspDTI ATGAA 3 cut(s) 146, 161, 341
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 2 cut(s) 12, 681
Vha464I CTTAAG 1 cut(s) 554
VspI ATTAAT 2 cut(s) 380, 690
XapI RAATTY 2 cut(s) 148, 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.