Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

4826047 .. 4830548

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCACTTTTCTTGTCGTCGACGTTTGATCAGGCTTATCATCAGCTCGCAGAAATCGAAGCGGAACTGAAAGCAGCAATGGCTGGATCGAAGAAAGTGATAACGAGGGAAGAGTGGGAGAAGAAGCTTAATGATGTGAAGATCAAGAAGGAGGACATGAATAAACTGGTGATGAATTTCCTTGTGACTGAGGGTTATGTGGATGCGGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACCAGATATTGATCTTGCAACAATCACTGACCGCATGGCGGTCAAGAAGGCGGTACAATGTGGTAATGTGGAGGATGCAATTGAGAAGGTGAACGACTTAAACCCGGAGATTCTGGACACAAATCCCCAGTTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAGCTAATTAGGAATGGAAAGGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGAGGAGAAGAAAATGTAAGATTCAGCTATTGTACCTTTGTTTTGGTTGACTGTGATATGTGTAATTGTTGCTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

181

Amino Acids

20.68

Weight (kDa)

4.7

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	51 - 77	2e-09	LisH
CTLH	PF10607	88 - 160	1.9e-19	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	6 cut(s)	62, 206, 209, 271, 278, 290
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	175, 215
AfaI	GTAC	2 cut(s)	294, 499
AfiI	CCNNNNNNNGG	1 cut(s)	277
AluBI	AGCT	5 cut(s)	46, 127, 406, 457, 492
AluI	AGCT	5 cut(s)	46, 127, 406, 457, 492
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	175, 215
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	181, 340
AsuNHI	GCTAGC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	458
BisI	GCNGC	2 cut(s)	75, 207
BlsI	GCNGC	2 cut(s)	76, 208
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	193, 304
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	171, 367
Bse3DI	GCAATG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	249
BseGI	GGATG	2 cut(s)	208, 319
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	180, 461
BseNI	ACTGG	2 cut(s)	171, 367
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	28, 86, 141, 250
BspACI	CCGC	6 cut(s)	62, 206, 209, 271, 278, 290
BspCNI	CTCAG	2 cut(s)	181, 460
BspLI	GGNNCC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	171, 367
BssMI	GATC	4 cut(s)	28, 86, 141, 250
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	3 cut(s)	105, 423, 447
BstC8I	GCNNGC	2 cut(s)	48, 459
BstDEI	CTNAG	2 cut(s)	189, 447
BstF5I	GGATG	2 cut(s)	208, 319
BstKTI	GATC	4 cut(s)	31, 89, 144, 253
BstMBI	GATC	4 cut(s)	28, 86, 141, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	208, 319
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	48, 459
Csp6I	GTAC	2 cut(s)	293, 498
CviAII	CATG	3 cut(s)	157, 274, 541
CviJI	RGCY	8 cut(s)	35, 46, 83, 127, 406, 434, 457, 492
CviKI_1	RGCY	8 cut(s)	35, 46, 83, 127, 406, 434, 457, 492
CviQI	GTAC	2 cut(s)	293, 498
DdeI	CTNAG	2 cut(s)	189, 447
DpnI	GATC	4 cut(s)	30, 88, 143, 252
DpnII	GATC	4 cut(s)	28, 86, 141, 250
Eam1104I	CTCTTC	3 cut(s)	105, 423, 447
EarI	CTCTTC	3 cut(s)	105, 423, 447
EciI	GGCGGA	1 cut(s)	224
FaeI	CATG	3 cut(s)	160, 277, 544
FaiI	YATR	5 cut(s)	158, 198, 275, 524, 542
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	3 cut(s)	156, 273, 540
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	75, 207
FokI	GGATG	2 cut(s)	215, 326
Fsp4HI	GCNGC	2 cut(s)	75, 207
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	2 cut(s)	75, 207
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	3 cut(s)	160, 277, 544
HincII	GTYRAC	2 cut(s)	21, 514
HindII	GTYRAC	2 cut(s)	21, 514
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	227, 349, 486
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	181, 340
Hpy166II	GTNNAC	3 cut(s)	21, 331, 514
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	6 cut(s)	145, 231, 283, 353, 437, 449
Hpy8I	GTNNAC	3 cut(s)	21, 331, 514
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	3 cut(s)	142, 280, 319
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	257, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	189, 447
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	160, 277, 544
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	28, 86, 141, 250
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	9 cut(s)	17, 69, 152, 216, 255, 338, 357, 380, 434
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	193, 304
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	3, 184
MalI	GATC	4 cut(s)	30, 88, 143, 252
MboI	GATC	4 cut(s)	28, 86, 141, 250
MboII	GAAGA	7 cut(s)	103, 122, 133, 151, 440, 464, 485
MfeI	CAATTG	1 cut(s)	318
MluCI	AATT	5 cut(s)	175, 215, 318, 408, 529
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	6 cut(s)	99, 145, 184, 304, 424, 461
MseI	TTAA	2 cut(s)	129, 338
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	28, 86, 141, 250
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	160, 277, 544
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	3, 184
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	227, 349, 486
PkrI	GCNGC	2 cut(s)	76, 208
PspN4I	GGNNCC	1 cut(s)	235
RsaI	GTAC	2 cut(s)	294, 499
RsaNI	GTAC	2 cut(s)	293, 498
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	129, 338
SatI	GCNGC	2 cut(s)	75, 207
Sau3AI	GATC	4 cut(s)	28, 86, 141, 250
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	2 cut(s)	193, 304
SgrDI	CGTCGACG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	175, 215, 318, 408, 529
SsiI	CCGC	6 cut(s)	62, 206, 209, 271, 278, 290
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	20, 57, 89
TasI	AATT	5 cut(s)	175, 215, 318, 408, 529
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	227, 349, 486
Tru1I	TTAA	2 cut(s)	129, 338
Tru9I	TTAA	2 cut(s)	129, 338
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	3, 184
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	3, 184
TspDTI	ATGAA	2 cut(s)	173, 188
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	175, 215
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.