Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Forward (+)

30050226 .. 30052752

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCCGTGCTCTGGATTATTGTTCATCAGCTTGCAGAGATCGAAGCAATGGCCGGGTCGAAGAAAGTCATAACGAGGGAAGAGTGGGAGAAGAAGCTCAAGGACGTAAAAATTAGGAAAGAGGACATGAATAAATTGGTGATGAACTTTCTTGTCACTGAGGGTTATGTGGATGCTGCTGAGAAATTCCGGAAGGAATCTGGAACCGAACCAGATATTGATCTTACAACCATCATGGACCGTATGGCTGTCAAGAAGGCAGTACAATGTGGTAATGTGGAGGATGCGATCGAGAAAGTGAATGACTTAAACCCTGAGATTCTGGATACAAATCCCCAATTATTTTTCCATCTCCAACAACAAAGGTTGATAGAACTAATTCGGAATGGAAAAGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGGGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTGCTAGCTTTTGAAGACGTGAACAACTGTCCCTTTGGAGAGCTTCTGGACATATCACAGCGCCTAAAGACAGCAAGTGAGGTGAATGCAGCCATCCTTACCAGCCAGAGTCATGAAAAAGATCCAAAGCTTCCAAGCTTATTGAAGATGCTGTTATGGGCTCAGAACCAGCTTGATGAAAAAGCCGCTTATCCTCGGATAAACAATCTTTCCATTGCCATGCTAGAAGACCCTACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

243

Amino Acids

27.62

Weight (kDa)

4.76

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	1 cut(s)	672
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	500, 631
AjiI	CACGTC	1 cut(s)	505
AluBI	AGCT	9 cut(s)	31, 97, 427, 456, 494, 529, 616, 624, 658
AluI	AGCT	9 cut(s)	31, 97, 427, 456, 494, 529, 616, 624, 658
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	176, 575
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	151, 580
AsuNHI	GCTAGC	2 cut(s)	427, 490
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	2 cut(s)	507, 720
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	163, 587
BccI	CCATC	3 cut(s)	239, 357, 587
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	4 cut(s)	428, 491, 710, 727
BfoI	RGCGCY	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	177, 576, 672
BlsI	GCNGC	3 cut(s)	178, 577, 673
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	163, 274, 624
BmtI	GCTAGC	2 cut(s)	431, 494
BpiI	GAAGAC	2 cut(s)	507, 720
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	83, 428
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	2 cut(s)	219, 330
BsaJI	CCNNGG	2 cut(s)	434, 680
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	2 cut(s)	54, 699
Bse8I	GATNNNNATC	2 cut(s)	219, 330
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	434, 680
BseGI	GGATG	3 cut(s)	178, 289, 579
BseJI	GATNNNNATC	2 cut(s)	219, 330
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	2 cut(s)	54, 699
BseMII	CTCAG	5 cut(s)	150, 171, 306, 431, 662
BseXI	GCAGC	2 cut(s)	163, 587
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	54, 190
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	12, 649
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	39, 220, 288, 607
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	5 cut(s)	151, 172, 307, 430, 661
BspEI	TCCGGA	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	205
BspOI	GCTAGC	2 cut(s)	431, 494
BspPI	GGATC	1 cut(s)	602
BspQI	GCTCTTC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	54, 699
BssECI	CCNNGG	2 cut(s)	434, 680
BssMI	GATC	4 cut(s)	39, 220, 288, 607
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	242, 481, 515, 724
Bst6I	CTCTTC	4 cut(s)	75, 393, 417, 459
BstC8I	GCNNGC	3 cut(s)	33, 429, 492
BstDEI	CTNAG	5 cut(s)	159, 180, 315, 417, 648
BstF5I	GGATG	3 cut(s)	178, 289, 579
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	4 cut(s)	42, 223, 291, 610
BstMBI	GATC	4 cut(s)	39, 220, 288, 607
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	163, 587
BstV2I	GAAGAC	2 cut(s)	507, 720
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	3 cut(s)	178, 289, 579
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	156, 485
Cac8I	GCNNGC	3 cut(s)	33, 429, 492
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	4 cut(s)	127, 235, 599, 706
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	5 cut(s)	159, 180, 315, 417, 648
DpnI	GATC	4 cut(s)	41, 222, 290, 609
DpnII	GATC	4 cut(s)	39, 220, 288, 607
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	4 cut(s)	75, 393, 417, 459
EarI	CTCTTC	4 cut(s)	75, 393, 417, 459
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	130, 238, 602, 709
FaiI	YATR	9 cut(s)	71, 128, 168, 236, 245, 539, 600, 643, 707
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	4 cut(s)	126, 234, 598, 705
Fnu4HI	GCNGC	3 cut(s)	177, 576, 672
FokI	GGATG	3 cut(s)	185, 296, 566
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	3 cut(s)	177, 576, 672
FspBI	CTAG	4 cut(s)	428, 491, 710, 727
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	3 cut(s)	177, 576, 672
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	54, 190
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	4 cut(s)	130, 238, 602, 709
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	454, 614, 622
HinfI	GANTC	3 cut(s)	197, 319, 595
HpaII	CCGG	2 cut(s)	54, 190
HphI	GGTGA	2 cut(s)	151, 580
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	384, 651, 684
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	187, 250
HpyCH4III	ACNGT	4 cut(s)	242, 481, 515, 724
HpyCH4IV	ACGT	2 cut(s)	105, 504
HpyCH4V	TGCA	3 cut(s)	35, 485, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	5 cut(s)	159, 180, 315, 417, 648
HpySE526I	ACGT	2 cut(s)	105, 504
Hsp92II	CATG	4 cut(s)	130, 238, 602, 709
HspAI	GCGC	1 cut(s)	547
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	39, 220, 288, 607
LguI	GCTCTTC	1 cut(s)	417
Lsp1109I	GCAGC	2 cut(s)	163, 587
LweI	GCATC	3 cut(s)	163, 274, 624
MaeI	CTAG	4 cut(s)	428, 491, 710, 727
MaeII	ACGT	2 cut(s)	105, 504
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	41, 222, 290, 609
MboI	GATC	4 cut(s)	39, 220, 288, 607
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	12, 649
MluCI	AATT	5 cut(s)	111, 134, 185, 338, 378
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	2 cut(s)	379, 450
MnlI	CCTC	8 cut(s)	69, 115, 154, 274, 394, 468, 559, 690
MroI	TCCGGA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	2 cut(s)	54, 190
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	4 cut(s)	39, 220, 288, 607
NheI	GCTAGC	2 cut(s)	427, 490
NlaIII	CATG	4 cut(s)	130, 238, 602, 709
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	417
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	197, 319
PkrI	GCNGC	3 cut(s)	178, 577, 673
Ple19I	CGATCG	1 cut(s)	291
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	607
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	177, 576, 672
Sau3AI	GATC	4 cut(s)	39, 220, 288, 607
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	12, 649
SfaNI	GCATC	3 cut(s)	163, 274, 624
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	98, 407
SmoI	CTYRAG	2 cut(s)	98, 407
Sse9I	AATT	5 cut(s)	111, 134, 185, 338, 378
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	4 cut(s)	428, 491, 710, 727
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	242, 481, 515, 724
TaiI	ACGT	2 cut(s)	108, 507
TaqI	TCGA	3 cut(s)	42, 59, 291
TasI	AATT	5 cut(s)	111, 134, 185, 338, 378
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	197, 319
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	163, 492
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	176, 575
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	14, 143, 158, 615, 678
TspRI	CASTG	2 cut(s)	163, 492
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	4 cut(s)	428, 491, 710, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.